| 2025 | 25th International Conference on Algorithms for Bioinformatics, WABI 2025, University of Maryland, College Park, MD, USA, August 20-22, 2025 Brona Brejová, Rob Patro |
| 2025 | A k-mer-Based Estimator of the Substitution Rate Between Repetitive Sequences. Haonan Wu, Antonio Blanca, Paul Medvedev |
| 2025 | An Efficient Data Structure and Algorithm for Long-Match Query in Run-Length Compressed BWT. Ahsan Sanaullah, Degui Zhi, Shaojie Zhang |
| 2025 | Approximability of Longest Run Subsequence and Complementary Minimization Problems. Yuichi Asahiro, Mingyang Gong, Jesper Jansson, Guohui Lin, Sichen Lu, Eiji Miyano, Hirotaka Ono, Toshiki Saitoh, Shunichi Tanaka |
| 2025 | Average-Tree Phylogenetic Diversity of Networks. Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller |
| 2025 | Design of Worst-Case-Optimal Spaced Seeds. Jens Zentgraf, Sven Rahmann |
| 2025 | DiVerG: Scalable Distance Index for Validation of Paired-End Alignments in Sequence Graphs. Ali Ghaffaari, Alexander Schönhuth, Tobias Marschall |
| 2025 | Dolphyin: A Combinatorial Algorithm for Identifying 1-Dollo Phylogenies in Cancer. Daniel W. Feng, Mohammed El-Kebir |
| 2025 | Estimation of Substitution and Indel Rates via k-mer Statistics. Mahmudur Rahman Hera, Paul Medvedev, David Koslicki, Antonio Blanca |
| 2025 | Extension of Partial Atom-To-Atom Maps: Uniqueness and Algorithms. Marcos E. González Laffitte, Tieu-Long Phan, Peter F. Stadler |
| 2025 | Fast Pseudoalignment Queries on Compressed Colored de Bruijn Graphs. Alessio Campanelli, Giulio Ermanno Pibiri, Rob Patro |
| 2025 | Front Matter, Table of Contents, Preface, Conference Organization. |
| 2025 | Haplotype-Aware Long-Read Error Correction. Parvesh Barak, Daniel Gibney, Chirag Jain |
| 2025 | Human Readable Compression of GFA Paths Using Grammar-Based Code. Peter Heringer, Daniel Doerr |
| 2025 | Identifying Breakpoint Median Genomes: A Branching Algorithm Approach. Poly H. da Silva, Arash Jamshidpey, David Sankoff |
| 2025 | Improved Algorithms for Bi-Partition Function Computation. John D. Bridgers, Jan Hoinka, S. Cenk Sahinalp, Salem Malikic, Teresa M. Przytycka, Funda Ergün |
| 2025 | Linear-Space Subquadratic-Time String Alignment Algorithm for Arbitrary Scoring Matrices. Ryosuke Yamano, Tetsuo Shibuya |
| 2025 | Lossless Pangenome Indexing Using Tag Arrays. Parsa Eskandar, Benedict Paten, Jouni Sirén |
| 2025 | Mutational Signature Refitting on Sparse Pan-Cancer Data. Gal Gilad, Teresa M. Przytycka, Roded Sharan |
| 2025 | Partitioned Multi-MUM Finding for Scalable Pangenomics (Extended Abstract). Vikram Shivakumar, Ben Langmead |
| 2025 | Recursive Parsing and Grammar Compression in the Era of Pangenomics (Invited Talk). Christina Boucher |
| 2025 | Sequence Similarity Estimation by Random Subsequence Sketching. Ke Chen, Vinamratha Pattar, Mingfu Shao |
| 2025 | Spark: Sparsified Hierarchical Energy Minimization of RNA Pseudoknots. Mateo Gray, Sebastian Will, Hosna Jabbari |
| 2025 | We Are What We Index; a Primer for the Wheeler Graph Era (Invited Talk). Ben Langmead |
| 2025 | Which Phylogenetic Networks Are Level-k Networks with Additional Arcs? Structure and Algorithms. Takatora Suzuki, Momoko Hayamizu |