| 2024 | 24th International Workshop on Algorithms in Bioinformatics, WABI 2024, Royal Holloway, London, United Kingdom, September 2-4, 2024 Solon P. Pissis, Wing-Kin Sung |
| 2024 | A Unifying Taxonomy of Pattern Matching in Degenerate Strings and Founder Graphs. Rocco Ascone, Giulia Bernardini, Alessio Conte, Massimo Equi, Estéban Gabory, Roberto Grossi, Nadia Pisanti |
| 2024 | A*PA2: Up to 19× Faster Exact Global Alignment. Ragnar Groot Koerkamp |
| 2024 | AlfaPang: Alignment Free Algorithm for Pangenome Graph Construction. Adam Cicherski, Anna Lisiecka, Norbert Dojer |
| 2024 | An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree. Yao-ban Chan |
| 2024 | Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads. Xiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, Mingfu Shao |
| 2024 | Applying the Safe-And-Complete Framework to Practical Genome Assembly. Sebastian S. Schmidt, Santeri Toivonen, Paul Medvedev, Alexandru I. Tomescu |
| 2024 | Bioinformatics of Pathogens (Invited Talk). Tomás Vinar |
| 2024 | Cosine Similarity Estimation Using FracMinHash: Theoretical Analysis, Safety Conditions, and Implementation. Mahmudur Rahman Hera, David Koslicki |
| 2024 | Finding Maximum Common Contractions Between Phylogenetic Networks. Bertrand Marchand, Nadia Tahiri, Olivier Tremblay-Savard, Manuel Lafond |
| 2024 | Front Matter, Table of Contents, Preface, Conference Organization. |
| 2024 | MEM-Based Pangenome Indexing for k-mer Queries. Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, Ben Langmead |
| 2024 | McDag: Indexing Maximal Common Subsequences in Practice. Giovanni Buzzega, Alessio Conte, Roberto Grossi, Giulia Punzi |
| 2024 | Memoization on Shared Subtrees Accelerates Computations on Genealogical Forests. Lukas Hübner, Alexandros Stamatakis |
| 2024 | On the Complexity of the Median and Closest Permutation Problems. Luís Cunha, Ignasi Sau, Uéverton S. Souza |
| 2024 | Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child Orientation. Tsuyoshi Urata, Manato Yokoyama, Momoko Hayamizu |
| 2024 | PLA-index: A k-mer Index Exploiting Rank Curve Linearity. Md. Hasin Abrar, Paul Medvedev |
| 2024 | RNA Inverse Folding Can Be Solved in Linear Time for Structures Without Isolated Stacks or Base Pairs. Théo Boury, Laurent Bulteau, Yann Ponty |
| 2024 | RNA Triplet Repeats: Improved Algorithms for Structure Prediction and Interactions. Kimon Boehmer, Sarah J. Berkemer, Sebastian Will, Yann Ponty |
| 2024 | Reconstructing Rearrangement Phylogenies of Natural Genomes. Leonard Bohnenkämper, Jens Stoye, Daniel Dörr |
| 2024 | Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees. Yuanyuan Qi, Mohammed El-Kebir |
| 2024 | Swiftly Identifying Strongly Unique k-Mers. Jens Zentgraf, Sven Rahmann |
| 2024 | The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees. Alitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, Manuel Lafond |
| 2024 | The {mod-minimizer}: A Simple and Efficient Sampling Algorithm for Long k-Mers. Ragnar Groot Koerkamp, Giulio Ermanno Pibiri |
| 2024 | b-move: Faster Bidirectional Character Extensions in a Run-Length Compressed Index. Lore Depuydt, Luca Renders, Simon Van de Vyver, Lennart Veys, Travis Gagie, Jan Fostier |