| 2023 | 23rd International Workshop on Algorithms in Bioinformatics, WABI 2023, Houston, TX, USA, September 4-6, 2023 Djamal Belazzougui, Aïda Ouangraoua |
| 2023 | Acceleration of FM-Index Queries Through Prefix-Free Parsing. Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, Travis Gagie |
| 2023 | Algorithmic Approaches to Study Mutational Processes in Cancer (Invited Talk). Teresa M. Przytycka |
| 2023 | Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique. Théo Boury, Yann Ponty, Vladimir Reinharz |
| 2023 | BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract). Eleanor Wedell, Chengze Shen, Tandy J. Warnow |
| 2023 | Balancing Minimum Free Energy and Codon Adaptation Index for Pareto Optimal RNA Design. Xinyu Gu, Yuanyuan Qi, Mohammed El-Kebir |
| 2023 | Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem. Leonard Bohnenkämper |
| 2023 | Co-Linear Chaining on Pangenome Graphs. Jyotshna Rajput, Ghanshyam Chandra, Chirag Jain |
| 2023 | Compression Algorithm for Colored de Bruijn Graphs. Amatur Rahman, Yoann Dufresne, Paul Medvedev |
| 2023 | EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract). Chengze Shen, Baqiao Liu, Kelly P. Williams, Tandy J. Warnow |
| 2023 | Exact Sketch-Based Read Mapping. Tizian Schulz, Paul Medvedev |
| 2023 | Fast, Parallel, and Cache-Friendly Suffix Array Construction. Jamshed Khan, Tobias Rubel, Laxman Dhulipala, Erin K. Molloy, Rob Patro |
| 2023 | Finding Maximal Exact Matches in Graphs. Nicola Rizzo, Manuel Cáceres, Veli Mäkinen |
| 2023 | Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching. Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset |
| 2023 | Front Matter, Table of Contents, Preface, Conference Organization. |
| 2023 | Fulgor: A Fast and Compact {k-mer} Index for Large-Scale Matching and Color Queries. Jason Fan, Noor Pratap Singh, Jamshed Khan, Giulio Ermanno Pibiri, Rob Patro |
| 2023 | Inferring Temporally Consistent Migration Histories. Mrinmoy Saha Roddur, Sagi Snir, Mohammed El-Kebir |
| 2023 | Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem. Junyan Dai, Tobias Rubel, Yunheng Han, Erin K. Molloy |
| 2023 | Making a Network Orchard by Adding Leaves. Leo van Iersel, Mark Jones, Esther Julien, Yukihiro Murakami |
| 2023 | Optimal Subtree Prune and Regraft for Quartet Score in Sub-Quadratic Time. Shayesteh Arasti, Siavash Mirarab |
| 2023 | Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model (Abstract). Yunheng Han, Erin K. Molloy |
| 2023 | Reinforcement Learning for Robotic Liquid Handler Planning. Mohsen Ferdosi, Yuejun Ge, Carl Kingsford |
| 2023 | Revisiting the Complexity of and Algorithms for the Graph Traversal Edit Distance and Its Variants. Yutong Qiu, Yihang Shen, Carl Kingsford |
| 2023 | Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings. Pawel Górecki, Natalia Rutecka, Agnieszka Mykowiecka, Jaroslaw Paszek |
| 2023 | SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles. Mateo Gray, Sebastian Will, Hosna Jabbari |