| 2022 | 22nd International Workshop on Algorithms in Bioinformatics, WABI 2022, Potsdam, Germany, September 5-7, 2022 Christina Boucher, Sven Rahmann |
| 2022 | A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance. Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye |
| 2022 | A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements. Pijus Simonaitis, Benjamin J. Raphael |
| 2022 | Accurate k-mer Classification Using Read Profiles. Yoshihiko Suzuki, Gene Myers |
| 2022 | Automated Design of Dynamic Programming Schemes for RNA Folding with Pseudoknots. Bertrand Marchand, Sebastian Will, Sarah J. Berkemer, Laurent Bulteau, Yann Ponty |
| 2022 | Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination. Konstantinn Bonnet, Tobias Marschall, Daniel Doerr |
| 2022 | Efficient Reconciliation of Genomic Datasets of High Similarity. Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov |
| 2022 | Efficient Solutions to Biological Problems Using de Bruijn Graphs (Invited Talk). Leena Salmela |
| 2022 | Eulertigs: Minimum Plain Text Representation of k-mer Sets Without Repetitions in Linear Time. Sebastian S. Schmidt, Jarno N. Alanko |
| 2022 | Fast Gapped k-mer Counting with Subdivided Multi-Way Bucketed Cuckoo Hash Tables. Jens Zentgraf, Sven Rahmann |
| 2022 | Fast and Accurate Species Trees from Weighted Internode Distances. Baqiao Liu, Tandy J. Warnow |
| 2022 | Feasibility of Flow Decomposition with Subpath Constraints in Linear Time. Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru |
| 2022 | Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes. Diego P. Rubert, Marília D. V. Braga |
| 2022 | Haplotype Threading Using the Positional Burrows-Wheeler Transform. Ahsan Sanaullah, Degui Zhi, Shaoije Zhang |
| 2022 | Locality-Sensitive Bucketing Functions for the Edit Distance. Ke Chen, Mingfu Shao |
| 2022 | New Algorithms for Structure Informed Genome Rearrangement. Eden Ozery, Meirav Zehavi, Michal Ziv-Ukelson |
| 2022 | Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer. Mathieu Gascon, Nadia El-Mabrouk |
| 2022 | On Weighted k-mer Dictionaries. Giulio Ermanno Pibiri |
| 2022 | Pangenomic Genotyping with the Marker Array. Taher Mun, Naga Sai Kavya Vaddadi, Ben Langmead |
| 2022 | Predicting Horizontal Gene Transfers with Perfect Transfer Networks. Alitzel López Sánchez, Manuel Lafond |
| 2022 | Prefix-Free Parsing for Building Large Tunnelled Wheeler Graphs. Adrián Goga, Andrej Baláz |
| 2022 | Reconstructing Phylogenetic Networks via Cherry Picking and Machine Learning. Giulia Bernardini, Leo van Iersel, Esther Julien, Leen Stougie |
| 2022 | Suffix Sorting via Matching Statistics. Zsuzsanna Lipták, Francesco Masillo, Simon J. Puglisi |
| 2022 | Toward Optimal Fingerprint Indexing for Large Scale Genomics. Clément Agret, Bastien Cazaux, Antoine Limasset |
| 2022 | WGSUniFrac: Applying UniFrac Metric to Whole Genome Shotgun Data. Wei Wei, David Koslicki |
| 2022 | phyBWT: Alignment-Free Phylogeny via eBWT Positional Clustering. Veronica Guerrini, Alessio Conte, Roberto Grossi, Gianni Liti, Giovanna Rosone, Lorenzo Tattini |