| 2014 | A Common Framework for Linear and Cyclic Multiple Sequence Alignment Problems. Sebastian Will, Peter F. Stadler |
| 2014 | A Faster 1.375-Approximation Algorithm for Sorting by Transpositions. Luís Felipe I. Cunha, Luis Antonio Brasil Kowada, Rodrigo de A. Hausen, Celina M. H. de Figueiredo |
| 2014 | A Generalized Cost Model for DCJ-Indel Sorting. Phillip E. C. Compeau |
| 2014 | A Graph Modification Approach for Finding Core-Periphery Structures in Protein Interaction Networks. Sharon Bruckner, Falk Hüffner, Christian Komusiewicz |
| 2014 | Algorithms in Bioinformatics - 14th International Workshop, WABI 2014, Wroclaw, Poland, September 8-10, 2014. Proceedings Dan Brown, Burkhard Morgenstern |
| 2014 | An LP-Rounding Algorithm for Degenerate Primer Design. Yu-Ting Huang, Marek Chrobak |
| 2014 | An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data. Dominik Kopczynski, Sven Rahmann |
| 2014 | Best-Fit in Linear Time for Non-generative Population Simulation - (Extended Abstract). Niina Haiminen, Claude Lebreton, Laxmi Parida |
| 2014 | Constructing String Graphs in External Memory. Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi |
| 2014 | Efficient Indexed Alignment of Contigs to Optical Maps. Martin D. Muggli, Simon J. Puglisi, Christina Boucher |
| 2014 | Efficient Local Alignment Discovery amongst Noisy Long Reads. Gene Myers |
| 2014 | Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences. Laxmi Parida, Cinzia Pizzi, Simona E. Rombo |
| 2014 | Estimating Evolutionary Distances from Spaced-Word Matches. Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege, Chris-André Leimeister |
| 2014 | GAML: Genome Assembly by Maximum Likelihood. Vladimír Boza, Brona Brejová, Tomás Vinar |
| 2014 | GDNorm: An Improved Poisson Regression Model for Reducing Biases in Hi-C Data. Ei-Wen Yang, Tao Jiang |
| 2014 | Improved Approximation for the Maximum Duo-Preservation String Mapping Problem. Nicolas Boria, Adam Kurpisz, Samuli Leppänen, Monaldo Mastrolilli |
| 2014 | Interpretable Per Case Weighted Ensemble Method for Cancer Associations. Adrin Jalali, Nico Pfeifer |
| 2014 | Linearization of Median Genomes under DCJ. Shuai Jiang, Max A. Alekseyev |
| 2014 | Manifold de Bruijn Graphs. Yu Lin, Pavel A. Pevzner |
| 2014 | Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting Performance and Quality. Kerstin Scheubert, Franziska Hufsky, Sebastian Böcker |
| 2014 | Navigating in a Sea of Repeats in RNA-seq without Drowning. Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix |
| 2014 | New Algorithms for Computing Phylogenetic Biodiversity. Constantinos Tsirogiannis, Brody Sandel, Adrija Kalvisa |
| 2014 | On the Family-Free DCJ Distance. Fábio Viduani Martinez, Pedro Feijão, Marília D. V. Braga, Jens Stoye |
| 2014 | Pacemaker Partition Identification. Sagi Snir |
| 2014 | QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering. Matteo Comin, Andrea Leoni, Michele Schimd |
| 2014 | Reconstructing Mutational History in Multiply Sampled Tumors Using Perfect Phylogeny Mixtures. Iman Hajirasouliha, Benjamin J. Raphael |
| 2014 | The Divisible Load Balance Problem and Its Application to Phylogenetic Inference. Kassian Kobert, Tomás Flouri, Andre J. Aberer, Alexandros Stamatakis |
| 2014 | Topology-Driven Trajectory Synthesis with an Example on Retinal Cell Motions. Chen Gu, Leonidas J. Guibas, Michael Kerber |