| 2010 | A Worst-Case and Practical Speedup for the RNA Co-folding Problem Using the Yelena Frid, Dan Gusfield |
| 2010 | Accuracy Guarantees for Phylogeny Reconstruction Algorithms Based on Balanced Minimum Evolution. Magnus Bordewich, Radu Mihaescu |
| 2010 | Algorithms in Bioinformatics, 10th International Workshop, WABI 2010, Liverpool, UK, September 6-8, 2010. Proceedings Vincent Moulton, Mona Singh |
| 2010 | An Efficient Method for DNA-Based Species Assignment via Gene Tree and Species Tree Reconciliation. Louxin Zhang, Yun Cui |
| 2010 | An Experimental Study of Quartets MaxCut and Other Supertree Methods. M. Shel Swenson, Rahul Suri, C. Randal Linder, Tandy J. Warnow |
| 2010 | Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors. Thomas Greve Kristensen, Christian N. S. Pedersen |
| 2010 | Design of an Efficient Out-of-Core Read Alignment Algorithm. Arun Siddharth Konagurthu, Lloyd Allison, Thomas C. Conway, Bryan Beresford-Smith, Justin Zobel |
| 2010 | Discovering Kinship through Small Subsets. Daniel G. Brown, Tanya Y. Berger-Wolf |
| 2010 | Effective Algorithms for Fusion Gene Detection. Dan He, Eleazar Eskin |
| 2010 | Efficient Subgraph Frequency Estimation with G-Tries. Pedro Manuel Pinto Ribeiro, Fernando M. A. Silva |
| 2010 | Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms. Paulo Vieira Milreu, Vicente Acuña, Etienne Birmelé, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie, Vincent Lacroix |
| 2010 | Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data. Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alexander Zelikovsky |
| 2010 | Fast Mapping and Precise Alignment of AB SOLiD Color Reads to Reference DNA. Miklós Csürös, Szilveszter Juhos, Attila Bérces |
| 2010 | Fixed-Parameter Algorithm for Haplotype Inferences on General Pedigrees with Small Number of Sites. Duong Dai Doan, Patricia A. Evans |
| 2010 | Genomic Distance with DCJ and Indels. Marília D. V. Braga, Eyla Willing, Jens Stoye |
| 2010 | Haplotype Inference on Pedigrees with Recombinations and Mutations. Yuri Pirola, Paola Bonizzoni, Tao Jiang |
| 2010 | Haplotypes versus Genotypes on Pedigrees. Bonnie Kirkpatrick |
| 2010 | Identifying Rare Cell Populations in Comparative Flow Cytometry. Ariful Azad, Johannes Langguth, Youhan Fang, Yuan (Alan) Qi, Alex Pothen |
| 2010 | Improved Orientations of Physical Networks. Iftah Gamzu, Danny Segev, Roded Sharan |
| 2010 | Listing All Sorting Reversals in Quadratic Time. Krister M. Swenson, Ghada Badr, David Sankoff |
| 2010 | Pair HMM Based Gap Statistics for Re-evaluation of Indels in Alignments with Affine Gap Penalties. Alexander Schönhuth, Raheleh Salari, Süleyman Cenk Sahinalp |
| 2010 | Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. Corinna Theis, Stefan Janssen, Robert Giegerich |
| 2010 | Quantifying the Strength of Natural Selection of a Motif Sequence. Chen-Hsiang Yeang |
| 2010 | Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss. Denis Bertrand, Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk |
| 2010 | Reducing Multi-state to Binary Perfect Phylogeny with Applications to Missing, Removable, Inserted, and Deleted Data. Kristian Stevens, Dan Gusfield |
| 2010 | Reducing the Worst Case Running Times of a Family of RNA and CFG Problems, Using Valiant's Approach. Shay Zakov, Dekel Tsur, Michal Ziv-Ukelson |
| 2010 | Sparse Estimation for Structural Variability. Raghavendra Hosur, Rohit Singh, Bonnie Berger |
| 2010 | Sparsification of RNA Structure Prediction Including Pseudoknots. Mathias Möhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Süleyman Cenk Sahinalp |
| 2010 | Speeding Up Exact Motif Discovery by Bounding the Expected Clump Size. Tobias Marschall, Sven Rahmann |
| 2010 | Swiftly Computing Center Strings. Franziska Hufsky, Léon Kuchenbecker, Katharina Jahn, Jens Stoye, Sebastian Böcker |
| 2010 | The Complexity of Inferring a Minimally Resolved Phylogenetic Supertree. Jesper Jansson, Richard S. Lemence, Andrzej Lingas |