| 2020 | A Guided Network Propagation Approach to Identify Disease Genes that Combines Prior and New Information. Borislav H. Hristov, Bernard Chazelle, Mona Singh |
| 2020 | A Mixture Model for Signature Discovery from Sparse Mutation Data. Itay Sason, Yuexi Chen, Mark D. M. Leiserson, Roded Sharan |
| 2020 | A Randomized Parallel Algorithm for Efficiently Finding Near-Optimal Universal Hitting Sets. Baris Ekim, Bonnie Berger, Yaron Orenstein |
| 2020 | A Scalable Method for Estimating the Regional Polygenicity of Complex Traits. Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman |
| 2020 | AStarix: Fast and Optimal Sequence-to-Graph Alignment. Pesho Ivanov, Benjamin Bichsel, Harun Mustafa, André Kahles, Gunnar Rätsch, Martin T. Vechev |
| 2020 | Bagging MSA Learning: Enhancing Low-Quality PSSM with Deep Learning for Accurate Protein Structure Property Prediction. Yuzhi Guo, Jiaxiang Wu, Hehuan Ma, Sheng Wang, Junzhou Huang |
| 2020 | Bayesian Non-parametric Clustering of Single-Cell Mutation Profiles. Nico Borgsmüller, José Bonet, Francesco Marass, Abel González-Pérez, Núria López-Bigas, Niko Beerenwinkel |
| 2020 | CluStrat: A Structure Informed Clustering Strategy for Population Stratification. Aritra Bose, Myson C. Burch, Agniva Chowdhury, Peristera Paschou, Petros Drineas |
| 2020 | Computing the Rearrangement Distance of Natural Genomes. Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye |
| 2020 | Deep Large-Scale Multi-task Learning Network for Gene Expression Inference. Kamran Ghasedi Dizaji, Wei Chen, Heng Huang |
| 2020 | Efficient and Accurate Inference of Microbial Trajectories from Longitudinal Count Data. Tyler A. Joseph, Amey P. Pasarkar, Itsik Pe'er |
| 2020 | Estimating the Rate of Cell Type Degeneration from Epigenetic Sequencing of Cell-Free DNA. Christa Caggiano, Barbara Celona, Fleur Garton, Joel Mefford, Brian Black, Catherine Lomen-Hoerth, Andrew Dahl, Noah Zaitlen |
| 2020 | Evolutionary Context-Integrated Deep Sequence Modeling for Protein Engineering. Yunan Luo, Lam Vo, Hantian Ding, Yufeng Su, Yang Liu, Wesley Wei Qian, Huimin Zhao, Jian Peng |
| 2020 | Identifying Causal Variants by Fine Mapping Across Multiple Studies. Nathan LaPierre, Kodi Taraszka, Helen Huang, Rosemary He, Farhad Hormozdiari, Eleazar Eskin |
| 2020 | Iterative Refinement of Cellular Identity from Single-Cell Data Using Online Learning. Chao Gao, Joshua D. Welch |
| 2020 | Log Transformation Improves Dating of Phylogenies. Uyen Mai, Siavash Mirarab |
| 2020 | Lower Density Selection Schemes via Small Universal Hitting Sets with Short Remaining Path Length. Hongyu Zheng, Carl Kingsford, Guillaume Marçais |
| 2020 | MONN: A Multi-objective Neural Network for Predicting Pairwise Non-covalent Interactions and Binding Affinities Between Compounds and Proteins. Shuya Li, Fangping Wan, Hantao Shu, Tao Jiang, Dan Zhao, Jianyang Zeng |
| 2020 | MosaicFlye: Resolving Long Mosaic Repeats Using Long Reads. Anton Bankevich, Pavel A. Pevzner |
| 2020 | Multiple Competition-Based FDR Control and Its Application to Peptide Detection. Kristen Emery, Syamand Hasam, William Stafford Noble, Uri Keich |
| 2020 | NetMix: A Network-Structured Mixture Model for Reduced-Bias Estimation of Altered Subnetworks. Matthew A. Reyna, Uthsav Chitra, Rebecca Elyanow, Benjamin J. Raphael |
| 2020 | PWAS: Proteome-Wide Association Study. Nadav Brandes, Nathan Linial, Michal Linial |
| 2020 | PaccMann Jannis Born, Matteo Manica, Ali Oskooei, Joris Cadow, María Rodríguez Martínez |
| 2020 | Polynomial-Time Statistical Estimation of Species Trees Under Gene Duplication and Loss. Brandon Legried, Erin K. Molloy, Tandy J. Warnow, Sébastien Roch |
| 2020 | Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection. Gizem Caylak, A. Ercüment Çiçek |
| 2020 | Privacy-Preserving Biomedical Database Queries with Optimal Privacy-Utility Trade-Offs. Hyunghoon Cho, Sean Simmons, Ryan Kim, Bonnie Berger |
| 2020 | Probing Multi-way Chromatin Interaction with Hypergraph Representation Learning. Ruochi Zhang, Jian Ma |
| 2020 | Reconstructing Genotypes in Private Genomic Databases from Genetic Risk Scores. Brooks Paige, James Bell, Aurélien Bellet, Adrià Gascón, Daphne Ezer |
| 2020 | Reconstruction of Gene Regulatory Networks by Integrating Biological Model and a Recommendation System. Yijie Wang, Justin M. Fear, Isabelle Berger, Hangnoh Lee, Brian Oliver, Teresa M. Przytycka |
| 2020 | Representation of k-mer Sets Using Spectrum-Preserving String Sets. Amatur Rahman, Paul Medvedev |
| 2020 | Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Padua, Italy, May 10-13, 2020, Proceedings Russell Schwartz |
| 2020 | RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility Data to Elucidate Genome-Wide Chromatin Occupancy. Sneha Mitra, Jianling Zhong, David M. MacAlpine, Alexander J. Hartemink |
| 2020 | Single-Cell Tumor Phylogeny Inference with Copy-Number Constrained Mutation Losses. Gryte Satas, Simone Zaccaria, Geoffrey Mon, Benjamin J. Raphael |
| 2020 | Spectral Jaccard Similarity: A New Approach to Estimating Pairwise Sequence Alignments. Tavor Z. Baharav, Govinda M. Kamath, David N. C. Tse, Ilan Shomorony |
| 2020 | Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Module Identification. Roman Sarrazin-Gendron, Hua-Ting Yao, Vladimir Reinharz, Carlos G. Oliver, Yann Ponty, Jérôme Waldispühl |
| 2020 | Strain-Aware Assembly of Genomes from Mixed Samples Using Flow Variation Graphs. Jasmijn A. Baaijens, Leen Stougie, Alexander Schönhuth |
| 2020 | Supervised Adversarial Alignment of Single-Cell RNA-seq Data. Songwei Ge, Haohan Wang, Amir Alavi, Eric P. Xing, Ziv Bar-Joseph |
| 2020 | d-PBWT: Dynamic Positional Burrows-Wheeler Transform. Ahsan Sanaullah, Degui Zhi, Shaojie Zhang |