| 2017 | A Bayesian Active Learning Experimental Design for Inferring Signaling Networks. Robert Osazuwa Ness, Karen Sachs, Parag Mallick, Olga Vitek |
| 2017 | A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference. Elior Rahmani, Regev Schweiger, Liat Shenhav, Eleazar Eskin, Eran Halperin |
| 2017 | A Concurrent Subtractive Assembly Approach for Identification of Disease Associated Sub-metagenomes. Wontack Han, Mingjie Wang, Yuzhen Ye |
| 2017 | A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy |
| 2017 | A Flow Procedure for the Linearization of Genome Sequence Graphs. David Haussler, Maciej Smuga-Otto, Benedict Paten, Adam M. Novak, Sergei Nikitin, Maria Zueva, Dmitrii Miagkov |
| 2017 | A Network Integration Approach for Drug-Target Interaction Prediction and Computational Drug Repositioning from Heterogeneous Information. Yunan Luo, Xinbin Zhao, Jingtian Zhou, Jinling Yang, Yanqing Zhang, Wenhua Kuang, Jian Peng, Ligong Chen, Jianyang Zeng |
| 2017 | AllSome Sequence Bloom Trees. Chen Sun, Robert S. Harris, Rayan Chikhi, Paul Medvedev |
| 2017 | BBK Adegoke A. Ojewole, Jonathan D. Jou, Vance G. Fowler, Bruce Randall Donald |
| 2017 | BeWith: A Between-Within Method for Module Discovery in Cancer using Integrated Analysis of Mutual Exclusivity, Co-occurrence and Functional Interactions (Extended Abstract). Phuong Dao, Yoo-Ah Kim, Sanna Madan, Roded Sharan, Teresa M. Przytycka |
| 2017 | Boosting Alignment Accuracy by Adaptive Local Realignment. Dan F. DeBlasio, John D. Kececioglu |
| 2017 | Determining the Consistency of Resolved Triplets and Fan Triplets. Jesper Jansson, Andrzej Lingas, Ramesh Rajaby, Wing-Kin Sung |
| 2017 | Dynamic Alignment-Free and Reference-Free Read Compression. Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach |
| 2017 | E Pluribus Unum: United States of Single Cells. Joshua D. Welch, Alexander J. Hartemink, Jan F. Prins |
| 2017 | EPR-Dictionaries: A Practical and Fast Data Structure for Constant Time Searches in Unidirectional and Bidirectional FM Indices. Christopher Pockrandt, Marcel Ehrhardt, Knut Reinert |
| 2017 | Epistasis in Genomic and Survival Data of Cancer Patients. Dariusz Matlak, Ewa Szczurek |
| 2017 | Folding Membrane Proteins by Deep Transfer Learning. Zhen Li, Sheng Wang, Yizhou Yu, Jinbo Xu |
| 2017 | GATTACA: Lightweight Metagenomic Binning Using Kmer Counting. Victoria Popic, Volodymyr Kuleshov, Michael P. Snyder, Serafim Batzoglou |
| 2017 | Improved Search of Large Transcriptomic Sequencing Databases Using Split Sequence Bloom Trees. Brad Solomon, Carl Kingsford |
| 2017 | Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin |
| 2017 | Inference of the Human Polyadenylation Code. Michael K. K. Leung, Andrew Delong, Brendan J. Frey |
| 2017 | Joker de Bruijn: Sequence Libraries to Cover All k-mers Using Joker Characters. Yaron Orenstein, Ryan Kim, Polly Fordyce, Bonnie Berger |
| 2017 | K-mer Set Memory (KSM) Motif Representation Enables Accurate Prediction of the Impact of Regulatory Variants. Yuchun Guo, Kevin Tian, Haoyang Zeng, David K. Gifford |
| 2017 | Longitudinal Genotype-Phenotype Association Study via Temporal Structure Auto-learning Predictive Model. Xiaoqian Wang, Jingwen Yan, Xiaohui Yao, Sungeun Kim, Kwangsik Nho, Shannon L. Risacher, Andrew J. Saykin, Li Shen, Heng Huang |
| 2017 | NetREX: Network Rewiring Using EXpression - Towards Context Specific Regulatory Networks. Yijie Wang, Dong-Yeon Cho, Hangnoh Lee, Brian Oliver, Teresa M. Przytycka |
| 2017 | Network-Based Coverage of Mutational Profiles Reveals Cancer Genes. Borislav H. Hristov, Mona Singh |
| 2017 | Progressive Calibration and Averaging for Tandem Mass Spectrometry Statistical Confidence Estimation: Why Settle for a Single Decoy? Uri Keich, William Stafford Noble |
| 2017 | Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding. Jingkang Zhao, Dongshunyi Li, Jungkyun Seo, Andrew S. Allen, Raluca Gordân |
| 2017 | ROSE: A Deep Learning Based Framework for Predicting Ribosome Stalling. Sai Zhang, Hailin Hu, Jingtian Zhou, Xuan He, Tao Jiang, Jianyang Zeng |
| 2017 | Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Datasets. Alexander Shlemov, Sergey Bankevich, Andrey V. Bzikadze, Yana Safonova, Pavel A. Pevzner |
| 2017 | Research in Computational Molecular Biology - 21st Annual International Conference, RECOMB 2017, Hong Kong, China, May 3-7, 2017, Proceedings Süleyman Cenk Sahinalp |
| 2017 | Resolving Multicopy Duplications de novo Using Polyploid Phasing. Mark J. P. Chaisson, Sudipto Mukherjee, Sreeram Kannan, Evan E. Eichler |
| 2017 | Species Tree Estimation Using ASTRAL: How Many Genes Are Enough? Shubhanshu Shekhar, Sebastien Roch, Siavash Mirarab |
| 2017 | Superbubbles, Ultrabubbles and Cacti. Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey |
| 2017 | The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-sample Bulk Sequencing Tumor Data. Simone Zaccaria, Mohammed El-Kebir, Gunnar W. Klau, Benjamin J. Raphael |
| 2017 | Towards Recovering Allele-Specific Cancer Genome Graphs. Ashok Rajaraman, Jian Ma |
| 2017 | Ultra-Accurate Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders. Linh Huynh, Fereydoun Hormozdiari |
| 2017 | Ultra-Fast Identity by Descent Detection in Biobank-Scale Cohorts Using Positional Burrows-Wheeler Transform. Ardalan Naseri, Xiaoming Liu, Shaojie Zhang, Degui Zhi |
| 2017 | Using Stochastic Approximation Techniques to Efficiently Construct Confidence Intervals for Heritability. Regev Schweiger, Eyal Fisher, Elior Rahmani, Liat Shenhav, Saharon Rosset, Eran Halperin |
| 2017 | aBayesQR: A Bayesian Method for Reconstruction of Viral Populations Characterized by Low Diversity. Soyeon Ahn, Haris Vikalo |