| 2016 | A MAD-Bayes Algorithm for State-Space Inference and Clustering with Application to Querying Large Collections of ChIP-Seq Data Sets. Chandler Zuo, Kailei Chen, Sündüz Keles |
| 2016 | Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast. Hao Wang, Joel McManus, Carl Kingsford |
| 2016 | Allele-Specific Quantification of Structural Variations in Cancer Genomes. Yang Li, Shiguo Zhou, David C. Schwartz, Jian Ma |
| 2016 | AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments. Phuong Dao, Jan Hoinka, Yijie Wang, Mayumi Takahashi, Jiehua Zhou, Fabrizio Costa, John Rossi, John Burnett, Rolf Backofen, Teresa M. Przytycka |
| 2016 | Assembly of Long Error-Prone Reads Using de Bruijn Graphs. Yu Lin, Max W. Shen, Jeffrey Yuan, Mark Chaisson, Pavel A. Pevzner |
| 2016 | Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data. Nilgun Donmez, Salem Malikic, Alexander W. Wyatt, Martin E. Gleave, Colin C. Collins, Süleyman Cenk Sahinalp |
| 2016 | Complexes Detection in Biological Networks via Diversified Dense Subgraphs Mining. Xiuli Ma, Guangyu Zhou, Jingjing Wang, Jian Peng, Jiawei Han |
| 2016 | Distributed Gradient Descent in Bacterial Food Search. Shashank Singh, Sabrina Rashid, Saket Navlakha, Ziv Bar-Joseph |
| 2016 | Efficient Privacy-Preserving Read Mapping Using Locality Sensitive Hashing and Secure Kmer Voting. Victoria Popic, Serafim Batzoglou |
| 2016 | Enabling Privacy Preserving GWAS in Heterogeneous Human Populations. Sean Simmons, S. Cenk Sahinalp, Bonnie Berger |
| 2016 | Fast Bayesian Inference of Copy Number Variants Using Hidden Markov Models with Wavelet Compression. John Wiedenhoeft, Eric Brugel, Alexander Schliep |
| 2016 | Fast Phylogenetic Biodiversity Computations Under a Non-uniform Random Distribution. Constantinos Tsirogiannis, Brody Sandel |
| 2016 | Finding Mutated Subnetworks Associated with Survival in Cancer. Tommy Hansen, Fabio Vandin |
| 2016 | Flexible Modelling of Genetic Effects on Function-Valued Traits. Nicoló Fusi, Jennifer Listgarten |
| 2016 | Improving Bloom Filter Performance on Sequence Data Using k -mer Bloom Filters. David Pellow, Darya Filippova, Carl Kingsford |
| 2016 | Joint Alignment of Multiple Protein-Protein Interaction Networks via Convex Optimization. Somaye Hashemifar, Qixing Huang, Jinbo Xu |
| 2016 | LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency. Mark A. Hallen, Jonathan D. Jou, Bruce Randall Donald |
| 2016 | Locating a Tree in a Reticulation-Visible Network in Cubic Time. Andreas D. M. Gunawan, Bhaskar DasGupta, Louxin Zhang |
| 2016 | Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky |
| 2016 | Low-Density Locality-Sensitive Hashing Boosts Metagenomic Binning. Yunan Luo, Jianyang Zeng, Bonnie Berger, Jian Peng |
| 2016 | MetaFlow: Metagenomic Profiling Based on Whole-Genome Coverage Analysis with Min-Cost Flows. Ahmed Sobih, Alexandru I. Tomescu, Veli Mäkinen |
| 2016 | Multi-state Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing. Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael |
| 2016 | Multi-track Modeling for Genome-Scale Reconstruction of 3D Chromatin Structure from Hi-C Data. Chenchen Zou, Yuping Zhang, Zhengqing Ouyang |
| 2016 | Multitask Matrix Completion for Learning Protein Interactions Across Diseases. Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman, Keerthiram Murugesan |
| 2016 | New Genome Similarity Measures Based on Conserved Gene Adjacencies. Luis Antonio Brasil Kowada, Daniel Doerr, Simone Dantas, Jens Stoye |
| 2016 | On Computing Breakpoint Distances for Genomes with Duplicate Genes. Mingfu Shao, Bernard M. E. Moret |
| 2016 | Research in Computational Molecular Biology - 20th Annual Conference, RECOMB 2016, Santa Monica, CA, USA, April 17-21, 2016, Proceedings Mona Singh |
| 2016 | Revealing the Genetic Basis of Immune Traits in the Absence of Experimental Immunophenotyping. Yael Steuerman, Irit Gat-Viks |
| 2016 | SLICER: Inferring Branched, Nonlinear Cellular Trajectories from Single Cell RNA-seq Data. Joshua D. Welch, Ziqing Liu, Li Wang, Junjie Lu, Paul Lerou, Jeremy E. Purvis, Li Qian, Alexander J. Hartemink, Jan F. Prins |
| 2016 | Safe and Complete Contig Assembly Via Omnitigs. Alexandru I. Tomescu, Paul Medvedev |
| 2016 | Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments. Emre Sefer, Ziv Bar-Joseph |
| 2016 | Structural Variation Detection with Read Pair Information - An Improved Null-Hypothesis Reduces Bias. Kristoffer Sahlin, Mattias Frånberg, Lars Arvestad |
| 2016 | The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB). Farhad Hormozdiari, Fereydoun Hormozdiari, Carl Kingsford, Paul Medvedev, Fabio Vandin |
| 2016 | Tree Inference for Single-Cell Data. Katharina Jahn, Jack Kuipers, Niko Beerenwinkel |
| 2016 | mLDM: A New Hierarchical Bayesian Statistical Model for Sparse Microbial Association Discovery. Yuqing Yang, Ning Chen, Ting Chen |
| 2016 | metaSPAdes: A New Versatile de novo Metagenomics Assembler. Sergey Nurk, Dmitry Meleshko, Anton I. Korobeynikov, Pavel A. Pevzner |
| 2016 | pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor Progression. Simona Cristea, Jack Kuipers, Niko Beerenwinkel |