| 2015 | A Fast and Exact Algorithm for the Exemplar Breakpoint Distance. Mingfu Shao, Bernard M. E. Moret |
| 2015 | A Novel Probabilistic Methodology for eQTL Analysis of Signaling Networks. Roni Wilentzik, Irit Gat-Viks |
| 2015 | A Symmetric Length-Aware Enrichment Test. David Manescu, Uri Keich |
| 2015 | An Efficient Nonlinear Regression Approach for Genome-Wide Detection of Marginal and Interacting Genetic Variations. Seunghak Lee, Aurélie C. Lozano, Prabhanjan Kambadur, Eric P. Xing |
| 2015 | BWM*: A Novel, Provable, Ensemble-Based Dynamic Programming Algorithm for Sparse Approximations of Computational Protein Design. Jonathan D. Jou, Swati Jain, Ivelin Georgiev, Bruce Randall Donald |
| 2015 | CIDANE: Comprehensive Isoform Discovery and Abundance Estimation. Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau |
| 2015 | CRISPR Detection from Short Reads Using Partial Overlap Graphs. Ilan Ben-Bassat, Benny Chor |
| 2015 | CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer. Mark D. M. Leiserson, Hsin-Ta Wu, Fabio Vandin, Benjamin J. Raphael |
| 2015 | Comets (Constrained Optimization of Multistate Energies by Tree Search): A Provable and Efficient Algorithm to Optimize Binding Affinity and Specificity with Respect to Sequence. Mark Hallen, Bruce Randall Donald |
| 2015 | Computational Protein Design Using AND/OR Branch-and-Bound Search. Yichao Zhou, Yuexin Wu, Jianyang Zeng |
| 2015 | Constructing Structure Ensembles of Intrinsically Disordered Proteins from Chemical Shift Data. Huichao Gong, Sai Zhang, Jiangdian Wang, Haipeng Gong, Jianyang Zeng |
| 2015 | Deciding When to Stop: Efficient Experimentation to Learn to Predict Drug-Target Interactions (Extended Abstract). Maja Temerinac-Ott, Armaghan W. Naik, Robert F. Murphy |
| 2015 | Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations. Emre Sefer, Geet Duggal, Carl Kingsford |
| 2015 | Deep Feature Selection: Theory and Application to Identify Enhancers and Promoters. Yifeng Li, Chih-Yu Chen, Wyeth W. Wasserman |
| 2015 | Diffusion Component Analysis: Unraveling Functional Topology in Biological Networks. Hyunghoon Cho, Bonnie Berger, Jian Peng |
| 2015 | DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes (Extended Abstract). Naama Amir, Dan Cohen, Haim J. Wolfson |
| 2015 | Efficient Alignment Free Sequence Comparison with Bounded Mismatches. Srinivas Aluru, Alberto Apostolico, Sharma V. Thankachan |
| 2015 | Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure. Jong Wha J. Joo, Eun Yong Kang, Elin Org, Nicholas A. Furlotte, Brian Parks, Aldons J. Lusis, Eleazar Eskin |
| 2015 | Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models. Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski |
| 2015 | Fragmentation Trees Reloaded. Kai Dührkop, Sebastian Böcker |
| 2015 | Functional Alignment of Metabolic Networks. Arnon Mazza, Allon Wagner, Eytan Ruppin, Roded Sharan |
| 2015 | Gap Filling as Exact Path Length Problem. Leena Salmela, Kristoffer Sahlin, Veli Mäkinen, Alexandru I. Tomescu |
| 2015 | HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data. Emily Berger, Deniz Yörükoglu, Bonnie Berger |
| 2015 | Haplotype Allele Frequency (HAF) Score: Predicting Carriers of Ongoing Selective Sweeps Without Knowledge of the Adaptive Allele. Roy Ronen, Glenn Tesler, Ali Akbari, Shay Zakov, Noah A. Rosenberg, Vineet Bafna |
| 2015 | Immunoglobulin Classification Using the Colored Antibody Graph. Stefano Bonissone, Pavel A. Pevzner |
| 2015 | Joint Inference of Genome Structure and Content in Heterogeneous Tumor Samples. Andrew W. McPherson, Andrew Roth, Cédric Chauve, Süleyman Cenk Sahinalp |
| 2015 | KGSrna: Efficient 3D Kinematics-Based Sampling for Nucleic Acids. Rasmus Fonseca, Henry van den Bedem, Julie Bernauer |
| 2015 | Learning Microbial Interaction Networks from Metagenomic Count Data. Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic |
| 2015 | Locating a Tree in a Phylogenetic Network in Quadratic Time. Philippe Gambette, Andreas D. M. Gunawan, Anthony Labarre, Stéphane Vialette, Louxin Zhang |
| 2015 | On the Sample Complexity of Cancer Pathways Identification. Fabio Vandin, Benjamin J. Raphael, Eli Upfal |
| 2015 | Protein Contact Prediction by Integrating Joint Evolutionary Coupling Analysis and Supervised Learning. Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu |
| 2015 | Rapidly Registering Identity-by-Descent Across Ancestral Recombination Graphs. Shuo Yang, Shai Carmi, Itsik Pe'er |
| 2015 | Read Clouds Uncover Variation in Complex Regions of the Human Genome. Alex Bishara, Yuling Liu, Dorna Kashef Haghighi, Ziming Weng, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou |
| 2015 | Research in Computational Molecular Biology - 19th Annual International Conference, RECOMB 2015, Warsaw, Poland, April 12-15, 2015, Proceedings Teresa M. Przytycka |
| 2015 | ScaffMatch: Scaffolding Algorithm Based on Maximum Weight Matching. Igor Mandric, Alex Zelikovsky |
| 2015 | Topological Signatures for Population Admixture. Laxmi Parida, Filippo Utro, Deniz Yörükoglu, Anna Paola Carrieri, David Kuhn, Saugata Basu |
| 2015 | Ultra-Large Alignments Using Ensembles of Hidden Markov Models. Nam-phuong Nguyen, Siavash Mirarab, Keerthana Kumar, Tandy J. Warnow |