| 2014 | A Geometric Clustering Algorithm and Its Applications to Structural Data. Shutan Xu, Shuxue Zou, Lincong Wang |
| 2014 | A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation. Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc |
| 2014 | An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq Data. Chen-Ping Fu, Vladimir Jojic, Leonard McMillan |
| 2014 | An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes. Mingfu Shao, Yu Lin, Bernard M. E. Moret |
| 2014 | An Integrated Model of Multiple-Condition ChIP-Seq Data Reveals Predeterminants of Cdx2 Binding. Shaun Mahony, Matthew D. Edwards, Esteban O. Mazzoni, Richard Sherwood, Akshay Kakumanu, Carolyn A. Morrison, Hynek Wichterle, David K. Gifford |
| 2014 | AptaCluster - A Method to Cluster HT-SELEX Aptamer Pools and Lessons from Its Application. Jan Hoinka, Alexey Berezhnoy, Zuben E. Sauna, Eli Gilboa, Teresa M. Przytycka |
| 2014 | Bayesian Multiple Protein Structure Alignment. Rui Wang, Scott C. Schmidler |
| 2014 | Building a Pangenome Reference for a Population. Ngan Nguyen, Glenn Hickey, Daniel R. Zerbino, Brian J. Raney, Dent Earl, Joel Armstrong, David Haussler, Benedict Paten |
| 2014 | CSAX: Characterizing Systematic Anomalies in eXpression Data. Keith Noto, Carla E. Brodley, Saeed Majidi, Diana W. Bianchi, Donna K. Slonim |
| 2014 | Changepoint Analysis for Efficient Variant Calling. Adam E. Bloniarz, Ameet Talwalkar, Jonathan Terhorst, Michael I. Jordan, David A. Patterson, Bin Yu, Yun S. Song |
| 2014 | Correlated Protein Function Prediction via Maximization of Data-Knowledge Consistency. Hua Wang, Heng Huang, Chris H. Q. Ding |
| 2014 | Decoding Coalescent Hidden Markov Models in Linear Time. Kelley Harris, Sara Sheehan, John A. Kamm, Yun S. Song |
| 2014 | Exact Learning of RNA Energy Parameters from Structure. Hamidreza Chitsaz, Mohammad Aminisharifabad |
| 2014 | Fast Flux Module Detection Using Matroid Theory. Arne C. Müller, Frank J. Bruggeman, Brett G. Olivier, Leen Stougie |
| 2014 | Gene-Gene Interactions Detection Using a Two-Stage Model. Zhanyong Wang, Jae Hoon Sul, Sagi Snir, José Antonio Lozano, Eleazar Eskin |
| 2014 | HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time. Raunak Shrestha, Ermin Hodzic, Jake Yeung, Kendric Wang, Thomas Sauerwald, Phuong Dao, Shawn Anderson, Himisha Beltran, Mark A. Rubin, Colin C. Collins, Gholamreza Haffari, Süleyman Cenk Sahinalp |
| 2014 | HapTree: A Novel Bayesian Framework for Single Individual Polyplotyping Using NGS Data. Emily Berger, Deniz Yörükoglu, Jian Peng, Bonnie Berger |
| 2014 | IDBA-MTP: A Hybrid MetaTranscriptomic Assembler Based on Protein Information. Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin |
| 2014 | Imputation of Quantitative Genetic Interactions in Epistatic MAPs by Interaction Propagation Matrix Completion. Marinka Zitnik, Blaz Zupan |
| 2014 | Learning Protein-DNA Interaction Landscapes by Integrating Experimental Data through Computational Models. Jianling Zhong, Todd Wasson, Alexander J. Hartemink |
| 2014 | Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models. Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg |
| 2014 | MRFalign: Protein Homology Detection through Alignment of Markov Random Fields. Jianzhu Ma, Sheng Wang, Zhiyong Wang, Jinbo Xu |
| 2014 | Modeling Mutual Exclusivity of Cancer Mutations. Ewa Szczurek, Niko Beerenwinkel |
| 2014 | On Sufficient Statistics of Least-Squares Superposition of Vector Sets. Arun Siddharth Konagurthu, Parthan Kasarapu, Lloyd Allison, James H. Collier, Arthur M. Lesk |
| 2014 | On the Representation of de Bruijn Graphs. Rayan Chikhi, Antoine Limasset, Shaun Jackman, Jared T. Simpson, Paul Medvedev |
| 2014 | PASTA: Ultra-Large Multiple Sequence Alignment. Siavash Mirarab, Nam-phuong Nguyen, Tandy J. Warnow |
| 2014 | Reconciliation with Non-binary Gene Trees Revisited. Yu Zheng, Louxin Zhang |
| 2014 | Reconstructing Breakage Fusion Bridge Architectures Using Noisy Copy Numbers. Shay Zakov, Vineet Bafna |
| 2014 | Research in Computational Molecular Biology - 18th Annual International Conference, RECOMB 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings Roded Sharan |
| 2014 | Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation Data. Benjamin J. Raphael, Fabio Vandin |
| 2014 | The Generating Function Approach for Peptide Identification in Spectral Networks. Adrian Guthals, Christina Boucher, Nuno Bandeira |
| 2014 | Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts. Derek Aguiar, Eric M. Morrow, Sorin Istrail |
| 2014 | Traversing the k-mer Landscape of NGS Read Datasets for Quality Score Sparsification. Yun William Yu, Deniz Yörükoglu, Bonnie Berger |
| 2014 | Viral Quasispecies Assembly via Maximal Clique Enumeration. Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel |
| 2014 | WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads. Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth |
| 2014 | dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. Yana Safonova, Anton Bankevich, Pavel A. Pevzner |