| 2010 | A Markov Random Field Framework for Protein Side-Chain Resonance Assignment. Jianyang Zeng, Pei Zhou, Bruce Randall Donald |
| 2010 | A New Algorithm for Improving the Resolution of Cryo-EM Density Maps. Michael Hirsch, Bernhard Schölkopf, Michael Habeck |
| 2010 | A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using Yu-Wei Wu, Yuzhen Ye |
| 2010 | A Self-regulatory System of Interlinked Signaling Feedback Loops Controls Mouse Limb Patterning. Jean-Denis Benazet, Mirko Bischofberger, Eva Tiecke, Alexandre Gonalves, James F. Martin, Aime Zuniga, Felix Naef, Rolf Zeller |
| 2010 | Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin |
| 2010 | Admixture Aberration Analysis: Application to Mapping in Admixed Population Using Pooled DNA. Sivan Bercovici, Dan Geiger |
| 2010 | Algorithms for Detecting Significantly Mutated Pathways in Cancer. Fabio Vandin, Eli Upfal, Benjamin J. Raphael |
| 2010 | Alignment-Free Phylogenetic Reconstruction. Constantinos Daskalakis, Sébastien Roch |
| 2010 | An Algorithmic Framework for Predicting Side-Effects of Drugs. Nir Atias, Roded Sharan |
| 2010 | Automated High-Dimensional Flow Cytometric Data Analysis. Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Rossin, Tsung-I Lin, Lisa Maier, Clare Baecher-Allan, Geoffrey J. McLachlan, Pablo Tamayo, David Hafler, Philip L. De Jager, Jill P. Mesirov |
| 2010 | Cactus Graphs for Genome Comparisons. Benedict Paten, Mark Diekhans, Dent Earl, John St. John, Jian Ma, Bernard B. Suh, David Haussler |
| 2010 | Compressing Genomic Sequence Fragments Using SlimGene. Christos Kozanitis, Christopher T. Saunders, Semyon Kruglyak, Vineet Bafna, George Varghese |
| 2010 | Deciphering the Swine-Flu Pandemics of 1918 and 2009. Richard A. Goldstein, Mario dos Reis, Asif U. Tamuri, Alan J. Hay |
| 2010 | Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs. Barna Saha, Allison Hoch, Samir Khuller, Louiqa Raschid, Xiao-Ning Zhang |
| 2010 | Discovering Regulatory Overlapping RNA Transcripts. Timothy Danford, Robin D. Dowell, Sudeep Agarwala, Paula Grisafi, Gerald Fink, David K. Gifford |
| 2010 | Discovering Transcriptional Modules by Combined Analysis of Expression Profiles and Regulatory Sequences. Yonit Halperin, Chaim Linhart, Igor Ulitsky, Ron Shamir |
| 2010 | Distinguishing Direct versus Indirect Transcription Factor-DNA Interactions. Raluca Gordân, Alexander J. Hartemink, Martha L. Bulyk |
| 2010 | Extracting Between-Pathway Models from E-MAP Interactions Using Expected Graph Compression. David R. Kelley, Carl Kingsford |
| 2010 | Gapped Spectral Dictionaries and Their Applications for Database Searches of Tandem Mass Spectra. Kyowon Jeong, Sangtae Kim, Nuno Bandeira, Pavel A. Pevzner |
| 2010 | Generalized Buneman Pruning for Inferring the Most Parsimonious Multi-state Phylogeny. Navodit Misra, Guy E. Blelloch, R. Ravi, Russell Schwartz |
| 2010 | Genomic DNA Benny Chor, David Horn, Nick Goldman, Yaron Levy, Tim Massingham |
| 2010 | Genovo: Jonathan Laserson, Vladimir Jojic, Daphne Koller |
| 2010 | HLA Type Inference via Haplotypes Identical by Descent. Manu N. Setty, Alexander Gusev, Itsik Pe'er |
| 2010 | Hierarchical Generative Biclustering for MicroRNA Expression Analysis. José Caldas, Samuel Kaski |
| 2010 | IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler. Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin |
| 2010 | Incremental Signaling Pathway Modeling by Data Integration. Geoffrey Koh, David Hsu, P. S. Thiagarajan |
| 2010 | Inference of Isoforms from Short Sequence Reads. Jianxing Feng, Wei Li, Tao Jiang |
| 2010 | Leveraging Sequence Classification by Taxonomy-Based Multitask Learning. Christian Widmer, Jose Leiva, Yasemin Altun, Gunnar Rätsch |
| 2010 | MoGUL: Detecting Common Insertions and Deletions in a Population. Seunghak Lee, Eric P. Xing, Michael Brudno |
| 2010 | On the Genealogy of Asexual Diploids. Fumei Lam, Charles H. Langley, Yun S. Song |
| 2010 | Pathway-Based Functional Analysis of Metagenomes. Sivan Bercovici, Itai Sharon, Ron Y. Pinter, Tomer Shlomi |
| 2010 | Predicting Nucleosome Positioning Using Multiple Evidence Tracks. Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, William Stafford Noble |
| 2010 | Proteome Coverage Prediction for Integrated Proteomics Datasets. Manfred Claassen, Ruedi Aebersold, Joachim M. Buhmann |
| 2010 | Research in Computational Molecular Biology, 14th Annual International Conference, RECOMB 2010, Lisbon, Portugal, April 25-28, 2010. Proceedings Bonnie Berger |
| 2010 | Seed Design Framework for Mapping SOLiD Reads. Laurent Noé, Marta Gîrdea, Gregory Kucherov |
| 2010 | Simultaneous Identification of Causal Genes and Dys-Regulated Pathways in Complex Diseases. Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka |
| 2010 | SubMAP: Aligning Metabolic Pathways with Subnetwork Mappings. Ferhat Ay, Tamer Kahveci |
| 2010 | Subnetwork State Functions Define Dysregulated Subnetworks in Cancer. Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk |
| 2010 | The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail |
| 2010 | The Poisson Margin Test for Normalisation Free Significance Analysis of NGS Data. Adam Kowalczyk, Justin Bedo, Thomas C. Conway, Bryan Beresford-Smith |
| 2010 | Time and Space Efficient RNA-RNA Interaction Prediction via Sparse Folding. Raheleh Salari, Mathias Möhl, Sebastian Will, Süleyman Cenk Sahinalp, Rolf Backofen |
| 2010 | Towards Automated Structure-Based NMR Resonance Assignment. Richard Jang, Xin Gao, Ming Li |
| 2010 | naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing. Wei-Chun Kao, Yun S. Song |