| 2008 | A Bayesian Approach to Protein Inference Problem in Shotgun Proteomics. Yong Fuga Li, Randy J. Arnold, Yixue Li, Predrag Radivojac, Quanhu Sheng, Haixu Tang |
| 2008 | A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors. Yanxin Shi, Itamar Simon, Tom M. Mitchell, Ziv Bar-Joseph |
| 2008 | A Fast, Alignment-Free, Conservation-Based Method for Transcription Factor Binding Site Discovery. Raluca Gordân, Leelavati Narlikar, Alexander J. Hartemink |
| 2008 | A Fragmentation Event Model for Peptide Identification by Mass Spectrometry. Yu Lin, Yantao Qiao, Shiwei Sun, Chungong Yu, Gongjin Dong, Dongbo Bu |
| 2008 | Ab Initio Whole Genome Shotgun Assembly with Mated Short Reads. Paul Medvedev, Michael Brudno |
| 2008 | Accounting for Non-genetic Factors Improves the Power of eQTL Studies. Oliver Stegle, Anitha Kannan, Richard Durbin, John M. Winn |
| 2008 | Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony. Rune B. Lyngsø, Yun S. Song, Jotun Hein |
| 2008 | Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins. Wei Zheng, Alan M. Friedman, Chris Bailey-Kellogg |
| 2008 | An Integrative Network Approach to Map the Transcriptome to the Phenome. Michael R. Mehan, Juan Nunez-Iglesias, Mrinal Kalakrishnan, Michael S. Waterman, Xianghong Jasmine Zhou |
| 2008 | At the Origin of Life: How Did Folded Proteins Evolve? Andrei N. Lupas |
| 2008 | Automatic Parameter Learning for Multiple Network Alignment. Jason Flannick, Antal F. Novak, Chuong B. Do, Balaji S. Srinivasan, Serafim Batzoglou |
| 2008 | Automatic Recognition of Cells (ARC) for 3D Images of C. elegans. Fuhui Long, Hanchuan Peng, Xiao Liu, Stuart K. Kim, Gene Myers |
| 2008 | BCL-2: From Translocation to Therapy. Suzanne Cory |
| 2008 | BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes. Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Selen Uguroglu, Eric P. Xing |
| 2008 | Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast. Caroline C. Friedel, Jan Krumsiek, Ralf Zimmer |
| 2008 | Bubbles: Alternative Splicing Events of Arbitrary Dimension in Splicing Graphs. Michael Sammeth, Gabriel Valiente, Roderic Guigó |
| 2008 | CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads. Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai, Jonathan A. Eisen |
| 2008 | Computation of Median Gene Clusters. Sebastian Böcker, Katharina Jahn, Julia Mixtacki, Jens Stoye |
| 2008 | Computational Biology: Its Challenges Past, Present, and Future. Temple F. Smith |
| 2008 | Constructing Level-2 Phylogenetic Networks from Triplets. Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie, Ferry Hagen, Teun Boekhout |
| 2008 | Constructing Treatment Portfolios Using Affinity Propagation. Delbert Dueck, Brendan J. Frey, Nebojsa Jojic, Vladimir Jojic, Guri Giaever, Andrew Emili, Gabe Musso, Robert Hegele |
| 2008 | DLIGHT - Lateral Gene Transfer Detection Using Pairwise Evolutionary Distances in a Statistical Framework. Christophe Dessimoz, Daniel Margadant, Gaston H. Gonnet |
| 2008 | De Novo Sequencing of Nonribosomal Peptides. Nuno Bandeira, Julio Ng, Dario Meluzzi, Roger G. Linington, Pieter C. Dorrestein, Pavel A. Pevzner |
| 2008 | Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles. Igor Ulitsky, Richard M. Karp, Ron Shamir |
| 2008 | Disruption of a Transcriptional Regulatory Pathway Contributes to Phenotypes in Carriers of Ataxia Telangiectasia. Denis Smirnov, Vivian G. Cheung |
| 2008 | Effects of Genetic Divergence in Identifying Ancestral Origin Using HAPAA. Andreas Sundquist, Eugene Fratkin, Chuong B. Do, Serafim Batzoglou |
| 2008 | Fast and Accurate Alignment of Multiple Protein Networks. Maxim Kalaev, Vineet Bafna, Roded Sharan |
| 2008 | High-Resolution Modeling of Cellular Signaling Networks. Michael Baym, Chris Bakal, Norbert Perrimon, Bonnie Berger |
| 2008 | Increasing Power in Association Studies by Using Linkage Disequilibrium Structure and Molecular Function as Prior Information. Eleazar Eskin |
| 2008 | Locating Multiple Gene Duplications through Reconciled Trees. J. Gordon Burleigh, Mukul S. Bansal, André Wehe, Oliver Eulenstein |
| 2008 | More Efficient Algorithms for Closest String and Substring Problems. Bin Ma, Xiaoming Sun |
| 2008 | On the Inference of Ancestries in Admixed Populations. Sriram Sankararaman, Gad Kimmel, Eran Halperin, Michael I. Jordan |
| 2008 | Orchestration of DNA Methylation. Howard Cedar |
| 2008 | Panel Construction for Mapping in Admixed Populations Via Expected Mutual Information. Sivan Bercovici, Dan Geiger, Liran Shlush, Karl Skorecki, Alan A. Templeton |
| 2008 | Protein Function Prediction Based on Patterns in Biological Networks. Mustafa Kirac, Gultekin Özsoyoglu |
| 2008 | Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information. Jing Zhang, Xin Gao, Jinbo Xu, Ming Li |
| 2008 | Reconstructing the Evolutionary History of Complex Human Gene Clusters. Yu Zhang, Giltae Song, Tomás Vinar, Eric D. Green, Adam C. Siepel, Webb Miller |
| 2008 | Research in Computational Molecular Biology, 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings Martin Vingron, Limsoon Wong |
| 2008 | Spectrum Fusion: Using Multiple Mass Spectra for De Novo Peptide Sequencing. Ritendra Datta, Marshall W. Bern |
| 2008 | Systems Metabolic Engineering. Sang Yup Lee |
| 2008 | The Statistical Power of Phylogenetic Motif Models. John Hawkins, Timothy L. Bailey |
| 2008 | Transcriptional Regulation and Cancer Genomics. Edison T. Liu |