| 2007 | A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements. Anitha Kannan, Andrew Emili, Brendan J. Frey |
| 2007 | A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data. Ole Schulz-Trieglaff, Rene Hussong, Clemens Gröpl, Andreas Hildebrandt, Knut Reinert |
| 2007 | A Feature-Based Approach to Modeling Protein-DNA Interactions. Eilon Sharon, Eran Segal |
| 2007 | An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and Abhishek Garg, Ioannis Xenarios, Luis Mendoza, Giovanni De Micheli |
| 2007 | An Efficient and Accurate Graph-Based Approach to Detect Population Substructure. Srinath Sridhar, Satish Rao, Eran Halperin |
| 2007 | Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms. Yufeng Wu |
| 2007 | Beyond Galled Trees - Decomposition and Computation of Galled Networks. Daniel H. Huson, Tobias H. Klöpper |
| 2007 | Comparative Analysis of Spatial Patterns of Gene Expression in Cyrus L. Harmon, Parvez Ahammad, Ann Hammonds, Richard Weiszmann, Susan E. Celniker, Shankar Sastry, Gerald M. Rubin |
| 2007 | Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data. Joël R. Pradines, Vlado Dancík, Alan Ruttenberg, Victor Farutin |
| 2007 | Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments. Anthony A. Philippakis, Aaron M. Qureshi, Michael F. Berger, Martha L. Bulyk |
| 2007 | Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson |
| 2007 | Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models. Wenyi Wang, Benilton S. Carvalho, Nate Miller, Jonathan Pevsner, Aravinda Chakravarti, Rafael A. Irizarry |
| 2007 | Framework for Identifying Common Aberrations in DNA Copy Number Data. Amir Ben-Dor, Doron Lipson, Anya Tsalenko, Mark Reimers, Lars O. Baumbusch, Michael T. Barrett, John N. Weinstein, Anne-Lise Børresen-Dale, Zohar Yakhini |
| 2007 | Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation. Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead |
| 2007 | GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data. Yanxin Shi, Fan Guo, Wei Wu, Eric P. Xing |
| 2007 | Heuristics for the Gene-Duplication Problem: A Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulenstein, André Wehe |
| 2007 | Identification of Deletion Polymorphisms from Haplotypes. Erik Corona, Benjamin J. Raphael, Eleazar Eskin |
| 2007 | Improved Ranking Functions for Protein and Modification-Site Identifications. Marshall W. Bern, David Goldberg |
| 2007 | Minimizing and Learning Energy Functions for Side-Chain Prediction. Chen Yanover, Ora Schueler-Furman, Yair Weiss |
| 2007 | Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences. Yue Lu, Sing-Hoi Sze |
| 2007 | Multivariate Segmentation in the Analysis of Transcription Tiling Array Data. Antonio Piccolboni |
| 2007 | Network Legos: Building Blocks of Cellular Wiring Diagrams. T. M. Murali, Corban G. Rivera |
| 2007 | Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking. Joshua A. Grochow, Manolis Kellis |
| 2007 | Nucleosome Occupancy Information Improves Leelavati Narlikar, Raluca Gordân, Alexander J. Hartemink |
| 2007 | Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology. Rohit Singh, Jinbo Xu, Bonnie Berger |
| 2007 | Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions. Aaron A. Klammer, Xianhua Yi, Michael J. MacCoss, William Stafford Noble |
| 2007 | Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions. Hiroyuki Kuwahara, Chris J. Myers |
| 2007 | Protein Conformational Flexibility Analysis with Noisy Data. Anshul Nigham, David Hsu |
| 2007 | QNet: A Tool for Querying Protein Interaction Networks. Banu Dost, Tomer Shlomi, Nitin Gupta, Eytan Ruppin, Vineet Bafna, Roded Sharan |
| 2007 | RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints. Wah-Heng Lee, Wing-Kin Sung |
| 2007 | Rearrangements in Genomes with Centromeres Part I: Translocations. Michal Ozery-Flato, Ron Shamir |
| 2007 | Reconstructing the Phylogeny of Mobile Elements. Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin |
| 2007 | Reconstructing the Topology of Protein Complexes. Allister Bernard, David S. Vaughn, Alexander J. Hartemink |
| 2007 | Research in Computational Molecular Biology, 11th Annual International Conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings Terence P. Speed, Haiyan Huang |
| 2007 | Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding. Noah Zaitlen, Manuel Reyes-Gomez, David Heckerman, Nebojsa Jojic |
| 2007 | Support Vector Training of Protein Alignment Models. Chun-Nam John Yu, Thorsten Joachims, Ron Elber, Jaroslaw Pillardy |
| 2007 | Tools for Simulating and Analyzing RNA Folding Kinetics. Xinyu Tang, Shawna L. Thomas, Lydia Tapia, Nancy M. Amato |
| 2007 | Variational Upper Bounds for Probabilistic Phylogenetic Models. Ydo Wexler, Dan Geiger |