| 2000 | A combinatorial approach to protein docking with flexible side-chains. Ernst Althaus, Oliver Kohlbacher, Hans-Peter Lenhof, Peter Müller |
| 2000 | A compression algorithm for DNA sequences and its applications in genome comparison. Xin Chen, Sam Kwong, Ming Li |
| 2000 | A data-analysis pipeline for large-scale gene expression analysis. Steffen Hennig, Ralf Herwig, Matthew Clark, Pia Aanstad, A. Musa, John O'Brien, C. Bull, Uwe Radelof, Georgia Panopoulou, Albert J. Poustka, Hans Lehrach |
| 2000 | A simple iterative approach to parameter optimization. Alexander Zien, Ralf Zimmer, Thomas Lengauer |
| 2000 | A unified sequence-structure classification of protein sequences: combining sequence and structure in a map of the protein space. Golan Yona, Michael Levitt |
| 2000 | Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara |
| 2000 | An analytic approach to significance assessment in local sequence alignment with gaps. Ralf Bundschuh |
| 2000 | Class prediction and discovery using gene expression data. Donna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, Eric S. Lander |
| 2000 | Comprehensive statistical method for protein fold recognition. Jadwiga R. Bienkowska, Lihua Yu, Sophia Zarakhovich, Robert G. Rogers, Temple F. Smith |
| 2000 | Computing life and global technologies (abstract only). Leroy E. Hood |
| 2000 | Contig selection in physical mapping. Steffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron |
| 2000 | DNA sequence variation among humans and apes (abstract only). Henrik Kaessmann, Ingo Ebersberger, Victor Wiebe, Rikard Erlandsson, Jim F. Wilson, Carsten Schwarz, Michaela Winkler, Svante Pääbo |
| 2000 | Determining contact energy function for continuous state models of globular protein conformations. Y. Zenmei Ohkubo, Gordon M. Crippen |
| 2000 | Early eukaryote evolution based on mitochondrial gene order breakpoints. David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger |
| 2000 | Evolutionary features of genomes as disclosed by comparative analysis of complete genome sequences (abstract only). Takashi Gojobori, T. Daniel Andrews, Takeshi Itoh |
| 2000 | Extracting structured motifs using a suffix tree - algorithms and application to promoter consensus identification. Laurent Marsan, Marie-France Sagot |
| 2000 | Human and mouse gene structure: comparative analysis and application to exon prediction. Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander |
| 2000 | Human genome analysis and medicine in the 21st century (abstract only). Yusuke Nakamura |
| 2000 | Invited presentation: introns and modules in ancient conserved genes (abstract only). Walter Gilbert |
| 2000 | Matching simulation and experiment (extended abstract): a new simplified model for simulating protein folding. Jon M. Sorenson, Teresa Head-Gordon |
| 2000 | Molecular diversity: strategies and concerns (abstract only). Yvonne C. Martin, Mark G. Bures |
| 2000 | Multiple maxima of likelihood in phylogenetic trees: an analytic approach. Benny Chor, Michael D. Hendy, Barbara R. Holland, David Penny |
| 2000 | Mutation-tolerant protein identification by mass-spectrometry. Pavel A. Pevzner, Vlado Dancík, Chris L. Tang |
| 2000 | New algorithms for the duplication-loss model. Michael T. Hallett, Jens Lagergren |
| 2000 | Notung: dating gene duplications using gene family trees. Kevin C. Chen, Dannie Durand, Martin Farach-Colton |
| 2000 | On approximation algorithms for local multiple alignment. Tatsuya Akutsu, Hiroki Arimura, Shinichi Shimozono |
| 2000 | Optimal amnesic probabilistic automata or how to learn and classify proteins in linear time and space. Alberto Apostolico, Gill Bejerano |
| 2000 | Optimizing for success: a new score function for distantly related protein sequence comparison. Maricel Kann, Richard A. Goldstein |
| 2000 | PDB_ISL: an intermediate sequence library for protein structure assignment. Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park |
| 2000 | Probabilities for having a new fold on the basis of a map of all protein sequences. Elon Portugaly, Michal Linial |
| 2000 | Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, RECOMB 2000, Tokyo, Japan, April 8-11, 2000 Ron Shamir, Satoru Miyano, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman |
| 2000 | Protein structure determination using protein threading and sparse NMR data (extended abstract). Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu |
| 2000 | Pseudoknots in RNA secondary structures. Rune B. Lyngsø, Christian N. S. Pedersen |
| 2000 | Reconstructing distances in physical maps of chromosomes with nonoverlapping probes. John D. Kececioglu, Sanjay Shete, Jonathan P. Arnold |
| 2000 | Sequence comparison to graph comparison--a new generation of algorithms for network analysis of interacting molecules (abstract only). Minoru Kanehisa |
| 2000 | Sequencing a genome by walking with clone-end sequences: a mathematical analysis (abstract). Serafim Batzoglou, Bonnie Berger, Jill P. Mesirov, Eric S. Lander |
| 2000 | Sequencing-by-hybridization at the information-theory bound: an optimal algorithm. Franco P. Preparata, Eli Upfal |
| 2000 | Systematic and automated discovery of patterns in PROSITE families. Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano |
| 2000 | The E-CELL project: towards integrative simulation of cellular processes. Masaru Tomita, Kenta Hashimoto, Koichi Takahashi, Yuri Matsuzaki, Ryo Matsushima, Katsuyuki Yugi, Fumihiko Miyoshi, Hisako Nakano, Yusuke Saito, Tom Shimizu, Yoichi Nakayama |
| 2000 | The NOESY jigsaw: automated protein secondary structure and main-chain assignment from sparse, unassigned NMR data. Christopher Bailey-Kellogg, Alik Widge, John J. Kelley, Marcelo J. Berardi, John H. Bushweller, Bruce Randall Donald |
| 2000 | Tissue classification with gene expression profiles. Amir Ben-Dor, Laurakay Bruhn, Nir Friedman, Iftach Nachman, Michèl Schummer, Zohar Yakhini |
| 2000 | Tree fitting: an algebraic approach using profile distances. Richard Desper, Martin Vingron |
| 2000 | UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. Adam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga |
| 2000 | Universal DNA tag systems: a combinatorial design scheme. Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini |
| 2000 | Using Bayesian networks to analyze expression data. Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er |