| 1997 | A branch-and-cut algorithm for multiple sequence alignment. Knut Reinert, Hans-Peter Lenhof, Petra Mutzel, Kurt Mehlhorn, John D. Kececioglu |
| 1997 | A branch-and-cut approach to physical mapping with end-probes. Thomas Christof, Michael Jünger, John D. Kececioglu, Petra Mutzel, Gerhard Reinelt |
| 1997 | A more efficient approximation scheme for tree alignment. Lusheng Wang, Tao Jiang, Dan Gusfield |
| 1997 | Algorithms for computing and integrating physical maps using unique probes. Mudita Jain, Eugene W. Myers |
| 1997 | Aligning a DNA sequence with a protein sequence. Zheng Zhang, William R. Pearson, Webb Miller |
| 1997 | An algorithm for haplotype analysis. Shili Lin, Terence P. Speed |
| 1997 | An algorithmic approach to multiple complete digest mapping. Daniel P. Fasulo, Tao Jiang, Richard M. Karp, Reuben J. Settergren, Edward C. Thayer |
| 1997 | An iterative method for improved protein structural motif recognition. Bonnie Berger, Mona Singh |
| 1997 | Assessing inhomogeneities in bacterial long genomic sequences. Samuel Karlin |
| 1997 | Beyond islands (extended abstract): runs in clone-probe matrices. David Bruce Wilson, David S. Greenberg, Cynthia A. Phillips |
| 1997 | Building human genome maps with radiation hybrids. Donna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander |
| 1997 | Chain growth algorithms for HP-type lattice proteins. Erich Bornberg-Bauer |
| 1997 | Chimeric alignment by dynamic programming: algorithm and biological uses. George A. Komatsoulis, Michael S. Waterman |
| 1997 | Conserved segment identification. David Sankoff, Vincent Ferretti, Joseph H. Nadeau |
| 1997 | DNA probe arrays - accessing the genome (abstract). Robert J. Lipshutz |
| 1997 | Fabricating arrays of strings. J. Richard Bradley, Steven Skiena |
| 1997 | Fast and numerically stable parametric alignment of biosequences. Ralf Zimmer, Thomas Lengauer |
| 1997 | Faster and simpler algorithm for sorting signed permutations by reversals. Haim Kaplan, Ron Shamir, Robert Endre Tarjan |
| 1997 | Hunting for new restriction enzymes in GenBank (abstract). Richard J. Roberts |
| 1997 | Improved splice site detection in Genie. Martin G. Reese, Frank H. Eeckman, David Kulp, David Haussler |
| 1997 | Las Vegas algorithms for gene recognition: suboptimal and error-tolerant spliced alignment. Sing-Hoi Sze, Pavel A. Pevzner |
| 1997 | Lattice and off-lattice side chain models of protein folding (extended abstract): linear time structure prediction better than 86% of optimal. William E. Hart, Sorin Istrail |
| 1997 | Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model. Richa Agarwala, Serafim Batzoglou, Vlado Dancík, Scott E. Decatur, Martin Farach, Sridhar Hannenhalli, S. Muthukrishnan, Steven Skiena |
| 1997 | Mapping clones with a given ordering or interleaving (abstract). Tao Jiang, Richard M. Karp |
| 1997 | Monte Carlo sequence alignment. Gary A. Churchill |
| 1997 | New contact measures for the protein docking problem. Hans-Peter Lenhof |
| 1997 | New flexible approaches for multiple sequence alignment. Tetsuo Shibuya, Hiroshi Imai |
| 1997 | Numerical taxonomy on data (abstract): experimental results. Jaime Cohen, Martin Farach |
| 1997 | On constructing radiation hybrid maps (extended abstract). Amir Ben-Dor, Benny Chor |
| 1997 | On the approximation of protein threading. Tatsuya Akutsu, Satoru Miyano |
| 1997 | On the complexity and approximation of syntenic distance. Bhaskar DasGupta, Tao Jiang, Sampath Kannan, Ming Li, Z. Sweedyk |
| 1997 | On the computational complexity of sequence design problems. William E. Hart |
| 1997 | Pooling strategies for establishing physical genome maps using FISH. Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman |
| 1997 | Problems in understanding the structure and assembly of viruses (abstract). Johnathan King |
| 1997 | Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, RECOMB 1997, Santa Fe, NM, USA, January 20-23, 1997 Michael S. Waterman |
| 1997 | Progressive multiple alignment with constraints. Gene Myers, Sanford Selznick, Zheng Zhang, Webb Miller |
| 1997 | Protein structure prediction and potential energy landscape analysis using continuous global minimization. Ken A. Dill, Andrew T. Phillips, J. Ben Rosen |
| 1997 | ReAligner: a program for refining DNA sequence multi-alignments. Eric L. Anson, Eugene W. Myers |
| 1997 | Reference-based gene model prediction on DNA contigs (extended abstract). Ying Xu, Edward C. Uberbacher |
| 1997 | Sequence alignment with tandem duplication. Gary Benson |
| 1997 | Simulating Boolean circuits on a DNA computer. Mitsunori Ogihara, Animesh Ray |
| 1997 | Sorting by reversals is difficult. Alberto Caprara |
| 1997 | Supervised learning of hidden Markov models for sequence discrimination. Hiroshi Mamitsuka |
| 1997 | The application of Markov chain Monte Carlo methods to radiation hybrid mapping. S. C. Heath |
| 1997 | The deferred path heuristic for the generalized tree alignment problem. Benno Schwikowski, Martin Vingron |
| 1997 | The power of surface-based DNA computation (extended abstract). Weiping Cai, Anne Condon, Robert M. Corn, Elton Glaser, Zhengdong Fei, Tony Frutos, Zhen Guo, Max G. Lagally, Qinghua Liu, Lloyd M. Smith, Andrew Thiel |
| 1997 | The threading approach to the inverse protein folding problem. Temple F. Smith, Loredana Lo Conte, Jadwiga R. Bienkowska, Robert G. Rogers, Chrysanthe Gaitatzes, Richard H. Lathrop |
| 1997 | Towards constructing physical maps by optical mapping (extended abstract): an effective, simple, combinatorial approach. S. Muthukrishnan, Laxmi Parida |
| 1997 | Variations on a theme of Lander and Waterman (abstract). Terence P. Speed |