| 2002 | A powerful non-homology method for the prediction of operons in prokaryotes. Gabriel Moreno-Hagelsieb, Julio Collado-Vides |
| 2002 | A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio |
| 2002 | A tree kernel to analyse phylogenetic profiles. Jean-Philippe Vert |
| 2002 | A variance-stabilizing transformation for gene-expression microarray data. Blythe Durbin, Johanna S. Hardin, Douglas M. Hawkins, David M. Rocke |
| 2002 | Assigning probes into a small number of pools separable by electrophoresis. Teemu Kivioja, Mikko Arvas, Kari Kataja, Merja Penttilä, Hans Söderlund, Esko Ukkonen |
| 2002 | Beyond tandem repeats: complex pattern structures and distant regions of similarity. Amy M. Hauth, Deborah Joseph |
| 2002 | Binary tree-structured vector quantization approach to clustering and visualizing microarray data. Mujahid Sultan, Dennis A. Wigle, Christian A. Cumbaa, Marlena Maziarz, Janice I. Glasgow, Ming-Sound Tsao, Igor Jurisica |
| 2002 | Co-clustering of biological networks and gene expression data. Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer |
| 2002 | DNA sequence and structure: direct and indirect recognition in protein-DNA binding. Nicholas R. Steffen, S. D. Murphy, L. Tolleri, G. Wesley Hatfield, Richard H. Lathrop |
| 2002 | Detecting recombination with MCMC. Dirk Husmeier, Gráinne McGuire |
| 2002 | Discovering regulatory and signalling circuits in molecular interaction networks. Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel |
| 2002 | Discovering statistically significant biclusters in gene expression data. Amos Tanay, Roded Sharan, Ron Shamir |
| 2002 | Efficient multiple genome alignment. Michael Höhl, Stefan Kurtz, Enno Ohlebusch |
| 2002 | Efficiently detecting polymorphisms during the fragment assembly process. Daniel P. Fasulo, Aaron L. Halpern, Ian M. Dew, Clark M. Mobarry |
| 2002 | Evaluating functional network inference using simulations of complex biological systems. V. Anne Smith, Erich D. Jarvis, Alexander J. Hartemink |
| 2002 | Evaluating machine learning approaches for aiding probe selection for gene-expression arrays. J. B. Tobler, Michael Molla, Emile F. Nuwaysir, R. D. Green, Jude W. Shavlik |
| 2002 | Exact genetic linkage computations for general pedigrees. Maáyan Fishelson, Dan Geiger |
| 2002 | Finding composite regulatory patterns in DNA sequences. Eleazar Eskin, Pavel A. Pevzner |
| 2002 | Fully automated ab initio protein structure prediction using I-STES, HMMSTR and ROSETTA. Chris Bystroff, Yu Shao |
| 2002 | ISMB 2002 Janice I. Glasgow, Burkhard Rost |
| 2002 | Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis. Brian Tjaden, David R. Haynor, Sergey Stolyar, Carsten Rosenow, Eugene Kolker |
| 2002 | Inferring sub-cellular localization through automated lexical analysis. Rajesh Nair, Burkhard Rost |
| 2002 | Linking gene expression data with patient survival times using partial least squares. Peter J. Park, Lu Tian, Isaac S. Kohane |
| 2002 | Marginalized kernels for biological sequences. Koji Tsuda, Taishin Kin, Kiyoshi Asai |
| 2002 | Microarray synthesis through multiple-use PCR primer design. Rohan J. Fernandes, Steven Skiena |
| 2002 | Mining viral protease data to extract cleavage knowledge. Ajit Narayanan, Xikun Wu, Zheng Rong Yang |
| 2002 | Minreg: Inferring an active regulator set. Dana Pe'er, Aviv Regev, Amos Tanay |
| 2002 | Modelling regulatory pathways in E. coli from time series expression profiles. Irene M. Ong, Jeremy D. Glasner, David Page |
| 2002 | Multiple genome rearrangement: a general approach via the evolutionary genome graph. Dmitry Korkin, Lev Goldfarb |
| 2002 | Of truth and pathways: chasing bits of information through myriads of articles. Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky |
| 2002 | Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners. Gianluca Pollastri, Pierre Baldi |
| 2002 | Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada |
| 2002 | PseudoViewer: automatic visualization of RNA pseudoknots. Kyungsook Han, Yujin Lee, Wootaek Kim |
| 2002 | Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal |
| 2002 | Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models. Daniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett, Russ B. Altman |
| 2002 | Splicing graphs and EST assembly problem. Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner |
| 2002 | Statistical process control for large scale microarray experiments. Fabian Model, Thomas König, Christian Piepenbrock, Péter Adorján |
| 2002 | Statistically based postprocessing of phylogenetic analysis by clustering. Cara Stockham, Li-San Wang, Tandy J. Warnow |
| 2002 | Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patterns. Ekaterina M. Myasnikova, Anastassia Samsonova, Maria Samsonova, John Reinitz |
| 2002 | The POPPs: clustering and searching using peptide probability profiles. Michael J. Wise |
| 2002 | The Pathway Tools software. Peter D. Karp, Suzanne M. Paley, Pedro Romero |
| 2002 | The degenerate primer design problem. Chaim Linhart, Ron Shamir |
| 2002 | The metric space of proteins-comparative study of clustering algorithms. Ori Sasson, Nathan Linial, Michal Linial |
| 2002 | Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron |