| 2000 | A Multiple Alignment Algorithm for Metabolic Pathway Analysis Using Enzyme Hierarchy. Yukako Tohsato, Hideo Matsuda, Akihiro Hashimoto |
| 2000 | A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy J. Warnow, Stacia K. Wyman |
| 2000 | A Practical Algorithm for Optimal Inference of Haplotypes from Diploid Populations. Dan Gusfield |
| 2000 | A Pragmatic Information Extraction Strategy for Gathering Data on Genetic Interactions. Denys Proux, François Rechenmann, Laurent Julliard |
| 2000 | A Probabilistic Learning Approach to Whole-Genome Operon Prediction. Mark W. Craven, David Page, Jude W. Shavlik, Joseph Bockhorst, Jeremy D. Glasner |
| 2000 | A Statistical Method for Finding Transcription Factor Binding Sites. Saurabh Sinha, Martin Tompa |
| 2000 | Accelerating Protein Classification Using Suffix Trees. Bogdan Dorohonceanu, Craig G. Nevill-Manning |
| 2000 | Alignment of Flexible Protein Structures. Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson |
| 2000 | An Evaluation of Ontology Exchange Languages for Bioinformatics. Robin McEntire, Peter D. Karp, Neil F. Abernethy, David Benton, Gregg Helt, Matt DeJongh, Robert Kent, Anthony Kosky, Suzanna Lewis, Dan Hodnett, Eric P. Neumann, Frank Olken, Dhiraj K. Pathak, Peter Tarczy-Hornoch, Luca Toldo, Thodoros Topaloglou |
| 2000 | An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species. Mathieu Blanchette, Benno Schwikowski, Martin Tompa |
| 2000 | Analysis of Gene Expression Data with Pathway Scores. Alexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer |
| 2000 | Analysis of Gene Expression Microarrays for Phenotype Classification. Andrea Califano, Gustavo Stolovitzky, Yuhai Tu |
| 2000 | Analysis of Yeast's ORF Upstream Regions by Parallel Processing, Microarrays, and Computational Methods. Steven Hampson, Pierre Baldi, Dennis F. Kibler, Suzanne B. Sandmeyer |
| 2000 | Biclustering of Expression Data. Yizong Cheng, George M. Church |
| 2000 | Center CLICK: A Clustering Algorithm with Applications to Gene Expression Analysis. Roded Sharan, Ron Shamir |
| 2000 | Combinatorial Approaches to Finding Subtle Signals in DNA Sequences. Pavel A. Pevzner, Sing-Hoi Sze |
| 2000 | Computation and Visualization of Degenerate Repeats in Complete Genomes. Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich |
| 2000 | Efficient Attractor Analysis Based on Self-Dependent Subsets of Elements An Application to Signal Transduction Studies. Maura Cárdenas-García, Jaime Lagunez-Otero, Nikolai A. Korneev |
| 2000 | Finding Regulatory Elements Using Joint Likelihoods for Sequence and Expression Profile Data. Ian Holmes, William J. Bruno |
| 2000 | Genes, Themes, and Microarrays: Using Information Retrieval for Large-Scale Gene Analysis. Hagit Shatkay, Stephen Edwards, W. John Wilbur, Mark Boguski |
| 2000 | Genomic Fold Assignment and Rational Modeling of Proteins of Biological Interest. J. Michael Sauder, Roland L. Dunbrack Jr. |
| 2000 | Glimmers in the Midnight Zone: Characterization of Aligned Identical Residues in Sequence-Dissimilar Proteins Sharing a Common Fold. Iddo Friedberg, Tommy Kaplan, Hanah Margalit |
| 2000 | Integrative Analysis of Protein Interaction Data. Matthias Fellenberg, Kaj Albermann, Alfred Zollner, Hans-Werner Mewes, Jean Hani |
| 2000 | Intelligent Aids for Parallel Experiment Planning and Macromolecular Crystallization. Vanathi Gopalakrishnan, Bruce G. Buchanan, John M. Rosenberg |
| 2000 | Linear Modeling of Genetic Networks from Experimental Data. Eugene P. van Someren, Lodewyk F. A. Wessels, Marcel J. T. Reinders |
| 2000 | Matching Protein b-Sheet Partners by Feedforward and Recurrent Neural Networks. Pierre Baldi, Gianluca Pollastri, Claus A. F. Andersen, Søren Brunak |
| 2000 | Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data. Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen |
| 2000 | Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains. Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu, Peter M. Small, Russ B. Altman |
| 2000 | Prediction of the Number of Residue Contacts in Proteins. Piero Fariselli, Rita Casadio |
| 2000 | Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig |
| 2000 | Protein Family Classification Using Sparse Markov Transducers. Eleazar Eskin, William Noble Grundy, Yoram Singer |
| 2000 | Reducing Mass Degeneracy in SAR by MS by Stable Isotopic Labeling. Christopher Bailey-Kellogg, John J. Kelley, Clifford Stein, Bruce Randall Donald |
| 2000 | Regulatory Element Detection Using a Probabilistic Segmentation Model. Harmen J. Bussemaker, Hao Li, Eric D. Siggia |
| 2000 | Robust Parametric and Semi-Parametric Spot Fitting for Spot Array Images. Norbert Brändle, Horng-Yang Chen, Horst Bischof, Hilmar Lapp |
| 2000 | Search for a New Description of Protein Topology and Local Structure. Lukasz Jaroszewski, Adam Godzik |
| 2000 | Sequence Database Search Using Jumping Alignments. Rainer Spang, Marc Rehmsmeier, Jens Stoye |
| 2000 | Small Subunit Ribosomal RNA Modeling Using Stochastic Context-Free Grammars. Michael P. S. Brown |
| 2000 | Spectrum Alignment: Efficient Resequencing by Hybridization. Itsik Pe'er, Ron Shamir |
| 2000 | The Conserved Exon Method for Gene Finding. Vineet Bafna, Daniel H. Huson |
| 2000 | Towards a Complete Map of the Protein Space Based on a Unified Sequence and Structure Analysis of All Known Proteins. Golan Yona, Michael Levitt |
| 2000 | Towards a Systematics for Protein Subcellular Location: Quantitative Description of Protein Localization Patterns and Automated Analysis of Fluorescence Microscope Images. Robert F. Murphy, Michael V. Boland, Meel Velliste |
| 2000 | UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences. Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States |