| 1998 | A Computational System for Modeling Flexible Protein-Protein and protein-DNA Docking. Michael J. E. Sternberg, Patrick Aloy, Henry A. Gabb, Richard M. Jackson, Gidon Moont, Enrique Querol, Francesc X. Avilés |
| 1998 | A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences. Erik L. L. Sonnhammer, Gunnar von Heijne, Anders Krogh |
| 1998 | A Map of the Protein Space: An Automatic Hierarchical Classification of all Protein Sequences. Golan Yona, Nathan Linial, Naftali Tishby, Michal Linial |
| 1998 | A Statistical Theory of Sequence Alignment with Gaps. Dirk Drasdo, Terence Hwa, Michael Lässig |
| 1998 | A Surface Measure for Probabilistic Structural Computations. Jeanette P. Schmidt, Cheng Che Chen, Jonathan L. Cooper, Russ B. Altman |
| 1998 | Advanced Query Mechanisms for Biological Databases. I-Min A. Chen, Anthony Kosky, Victor M. Markowitz, Ernest Szeto, Thodoros Topaloglou |
| 1998 | Automated Clustering and Assembly of Large EST Collections. David P. Yee, Darrell Conklin |
| 1998 | Bayesian Protein Family Classifier. Kunbin Qu, Lee Ann McCue, Charles E. Lawrence |
| 1998 | BioSim: A New Qualitative Simulation Environment for Molecular Biology. Karsten R. Heidtke, Steffen Schulze-Kremer |
| 1998 | Calculating the Exact Probability of Language-Like Patterns in Biomolecular Sequences. Kevin Atteson |
| 1998 | Compression of Strings with Approximate Repeats. Lloyd Allison, Timothy Edgoose, Trevor I. Dix |
| 1998 | Computational Applications of DNA Structural Scales. Pierre Baldi, Søren Brunak, Yves Chauvin, Anders Gorm Pedersen |
| 1998 | GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer |
| 1998 | Genetic Algorithms for Protein Threading. Jacqueline Yadgari, Amihood Amir, Ron Unger |
| 1998 | Hierarchical Minimization with Distance and Angle Constraints. John R. Gunn |
| 1998 | IMGT/LIGM-DB: A Systematized Approach for ImMunoGeneTics Database Coherence and Data Distribution Improvement. Véronique Giudicelli, Denys Chaume, Marie-Paule Lefranc |
| 1998 | Identification of Divergent Functions in Homologous Proteins by Induction over Conserved Modules. Imran Shah, Lawrence Hunter |
| 1998 | Modeling Protein Homopolymeric Repeats: Possible Polyglutamine Structural Motifs for Huntington's Disease. Richard H. Lathrop, Malcolm S. Casale, Douglas J. Tobias, J. Lawrence Marsh, Leslie M. Thompson |
| 1998 | Phylogenetic Inference in Protein Superfamilies: Analysis of SH2 Domains. Kimmen Sjölander |
| 1998 | Prediction of Signal Peptides and Signal Anchors by a Hidden Markov Model. Henrik Nielsen, Anders Krogh |
| 1998 | Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28 - July 1, 1998 Janice I. Glasgow, Timothy G. Littlejohn, François Major, Richard H. Lathrop, David Sankoff, Christoph W. Sensen |
| 1998 | Segment-Based Scores for Pairwise and Multiple Sequence Alignments. Burkhard Morgenstern, William R. Atchley, Klaus Hahn, Andreas W. M. Dress |
| 1998 | Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis. Eric C. Rouchka, David J. States |
| 1998 | TAMBIS: Transparent Access to Multiple Bioinformatics Information Sources. Patricia G. Baker, Andy Brass, Sean Bechhofer, Carole A. Goble, Norman W. Paton, Robert Stevens |
| 1998 | The LabFlow System for Workflow Management in Large Scale Biology Research Laboratories. Nathan Goodman, Steve Rozen, Lincoln Stein |
| 1998 | The Ribosome Scanning Model for Translation Initiation: Implications for Gene Prediction and Full-Length cDNA Detection. Pankaj Agarwal, Vineet Bafna |