| 1996 | A Generalized Hidden Markov Model for the Recognition of Human Genes in DNA. David Kulp, David Haussler, Martin G. Reese, Frank H. Eeckman |
| 1996 | A Grammar-Based Unification of Several Alignment and Folding Algorithms. Fabrice Lefebvre |
| 1996 | A Knowledge-Based Method for Protein Structure Refinement and Prediction. Shankar Subramaniam, David K. Tcheng, James M. Fenton |
| 1996 | A Probabilistic Classification System for Predicting the Cellular Localization Sites of Proteins. Paul Horton, Kenta Nakai |
| 1996 | A Sequence Similarity Search Algorithm Based on a Probabilistic Interpretation of an Alignment Scoring System. Philipp Bucher, Kay Hofmann |
| 1996 | A Top-Down Approach to Whole Genome Visualization. Klaus Heumann, C. Harris, Hans-Werner Mewes |
| 1996 | Applications of GeneMark in Multispecies Environments. James D. McIninch, William S. Hayes, Mark Borodovsky |
| 1996 | Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models. Anders Gorm Pedersen, Pierre Baldi, Søren Brunak, Yves Chauvin |
| 1996 | Compact Encoding Strategies for DNA Sequence Similarity Search. David J. States, Pankaj Agarwal |
| 1996 | Discovering Empirically Conserved Amino Acid Substitution Groups in Databases of Protein Families. Thomas D. Wu, Douglas L. Brutlag |
| 1996 | Discovering Patterns and Subfamilies in Biosequences. Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo |
| 1996 | Finding Genes in DNA Using Decision Trees and Dynamic Programming. Steven Salzberg, Xin Chen, John C. Henderson, Kenneth H. Fasman |
| 1996 | From Electron Density and Sequence to Structure: Integrating Protein Image Analysis and Threading for Structure Determination. Kim Baxter, Evan W. Steeg, Richard H. Lathrop, Janice I. Glasgow, Suzanne Fortier |
| 1996 | Gene Prediction by Pattern Recognition and Homology Search. Ying Xu, Edward C. Uberbacher |
| 1996 | Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model. Tetsushi Yada, Makoto Hirosawa |
| 1996 | GeneFisher-Software Support for the Detection of Postulated Genes. Robert Giegerich, Folker Meyer, Chris Schleiermacher |
| 1996 | Genome-Scale DNA Sequence Recognition by Hybridization to Short Oligomers. Aleksandar Milosavljevic, Suzana Savkovic, Radomir Crkvenjakov, David Salbego, Hope Serrato, Heidi Kreuzer, Anne Gemmell, Shawna Batus, Danica Grujic, Susan Carnahan, Jovanka Tepavcevic |
| 1996 | Good Maps Are Straight. Eric Harley, Anthony J. Bonner, Nathan Goodman |
| 1996 | HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzae. Peter D. Karp, Christos A. Ouzounis, Suzanne M. Paley |
| 1996 | Improving the Quality of Automatic DNA Sequence Assembly Using Fluorescent Trace-Data Classifications. Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Shavlik, Frederick R. Blattner |
| 1996 | Inferring Relatedness of a Macromolecule to a Sequence Database Without Sequencing. Jin Kim, James R. Cole, Eric Torng, Sakti Pramanik |
| 1996 | Ontological Foundations for Biology Knowledge Models. Carole D. Hafner, Natalya Fridman Noy |
| 1996 | Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation. Marcella A. McClure, Chris Smith, Pete Elton |
| 1996 | Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996 David J. States, Pankaj Agarwal, Terry Gaasterland, Lawrence Hunter, Randall Smith |
| 1996 | Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming. Burkhard Rost, Rita Casadio, Piero Fariselli |
| 1996 | The Mathematical Model of Subtractive Hybridization and Its Practical Application. Olga D. Ermolaeva, Sergey A. Lukyanov, Eugene D. Sverdlov |
| 1996 | The Megaprior Heuristic for Discovering Protein Sequence Patterns. Timothy L. Bailey, Michael Gribskov |
| 1996 | Using Iterative Dynamic Programming to Obtain Accurate Pairwise and Multiple Alignments of Protein Structures. Mark Gerstein, Michael Levitt |