| 1994 | A Flexible Approach to Genome Map Assembly. Eric Harley, Anthony J. Bonner |
| 1994 | A Generalized Profile Syntax for Biomolecular Sequence Motifs and its Function in Automatic Sequence Interpretation. Philipp Bucher, Amos Bairoch |
| 1994 | A Restriction Mapping Engine Using Constraint Logic Programming. Trevor I. Dix, Chut N. Yee |
| 1994 | Aligning Genomes with Inversions and Swaps. James L. Holloway, Paul Cull |
| 1994 | An Efficient Method for Multiple Sequence Alignment. Jin Kim, Sakti Pramanik |
| 1994 | An Expert System for Processing Sequence Homology Data. Erik L. L. Sonnhammer, Richard Durbin |
| 1994 | An Improved System for Exon Recognition and Gene Modeling in Human DNA Sequence. Yin Xu, J. Ralph Einstein, Richard J. Mural, Manesh J. Shah, Edward C. Uberbacher |
| 1994 | An Intelligent System for Comparing Protein Structures. Ethan Benatan |
| 1994 | Assigning Function to CDS Through Qualified Query Answering: Beyond Alignment and Motifs. Terry Gaasterland, Natalia Maltsev, Jorge Lobo, Guo-hua Chen |
| 1994 | Constraint Satisfaction Techniques for Modeling Large Complexes: Application to the Central Domain of 16S Ribosomal RNA. Russ B. Altman, Bryn Weiser, Harry F. Noller |
| 1994 | Creating a Knowledge Base of Biological Research Papers. Carole D. Hafner, Kenneth Baclawski, Robert P. Futrelle, Natalya Fridman Noy, Shobana Sampath |
| 1994 | DNA Sequence Analysis Using Hierarchical ART-based Classification Network. Cathie LeBlanc, Charles R. Katholi, Thomas R. Unnasch, Susan I. Hruska |
| 1994 | Describing Multiple Levels of Abstraction in the Metabolism. Michael L. Mavrovouniotis |
| 1994 | Design and Application of a C++ Macromolecular Class Library. Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne |
| 1994 | Discovering Side-Chain Correlations In alpha-Helices. Tod M. Klingler, Douglas L. Brutlag |
| 1994 | Distributed Machine Learning: Scaling Up with Coarse-grained Parallelism. Foster J. Provost, Daniel N. Hennessy |
| 1994 | Evolution of a Computer Program for Classifying Protein Segments as Transmembrane Domains Using Genetic Programming. John R. Koza |
| 1994 | Finding an Average Core Structure: Application to the Globins. Russ B. Altman, Mark Gerstein |
| 1994 | Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer. Timothy L. Bailey, Charles Elkan |
| 1994 | Flow Cytometry Data Analysis: Comparing Large Multivariate Data Sets Using Classification Trees. Joseph Norman |
| 1994 | GeneQuiz: A Workbench for Sequence Analysis. Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander |
| 1994 | Genetic Map Construction with Constraints. Dominic A. Clark, Christopher J. Rawlings, Sylvie Doursenot |
| 1994 | Geometric Problems in Molecular Biology and Robotics. David Parsons, John F. Canny |
| 1994 | High Speed Pattern Matching in Genetic Data Base with Reconfigurable Hardware. Eric Lemoine, Joël Quinqueton, Jean Sallantin |
| 1994 | Induction of Rules for Biological Macromolecular Crystallization. Daniel N. Hennessy, Vanathi Gopalakrishnan, Bruce G. Buchanan, John M. Rosenberg, Devika Subramanian |
| 1994 | Inductive Logic Programming Used to Discover Topological Constraints in Protein Structures. Ross D. King, Dominic A. Clark, Jack Shirazi, Michael J. E. Sternberg |
| 1994 | Integration of Competing Ancillary Assertions in Genome Assembly. Christian Burks, Rebecca J. Parsons, Michael L. Engle |
| 1994 | Intelligent DNA-Based Molecular Diagnostics Using Linked Genetic Markers. Dhiraj K. Pathak, Eric P. Hoffman, Mark W. Perlin |
| 1994 | Kinematic Manipulation of Molecular Chains Subject to Rigid Constraint. Dinesh Manocha, Yunshan Zhu |
| 1994 | Knowledge Discovery of Multilevel Protein Motifs. Darrell Conklin, Suzanne Fortier, Janice I. Glasgow |
| 1994 | Neural Networks for Determining Protein Specificity and Multiple Alignment of Binding Sites. John M. Heumann, Alan S. Lapedes, Gary D. Stormo |
| 1994 | Optimally Parsing a Sequence into Different Classes Based on Multiple Types of Evidence. Gary D. Stormo, David Haussler |
| 1994 | Predicting Location and Structure Of beta-Sheet Regions Using Stochastic Tree Grammars. Hiroshi Mamitsuka, Naoki Abe |
| 1994 | Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, August 14-17, 1994, Stanford University, Stanford, California, USA Russ B. Altman, Douglas L. Brutlag, Peter D. Karp, Richard H. Lathrop, David B. Searls |
| 1994 | Protein Design by Optimization of a Sequence-Structure Quality Function. Steven E. Brenner, Alan Berry |
| 1994 | Prototyping a Genetics Deductive Database . Catherine Hearne, Zhan Cui, Simon Parsons, Saki Hajnal |
| 1994 | RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars. Leslie Grate, Mark Herbster, Richard Hughey, David Haussler, I. Saira Mian, Harry Noller |
| 1994 | Representations of Metabolic Knowledge: Pathways. Peter D. Karp, Suzanne M. Paley |
| 1994 | Segmentation and Interpretation of 3D Protein Images. Laurence Leherte, Kim Baxter, Janice I. Glasgow, Suzanne Fortier |
| 1994 | Sequence Comparisons via Algorithmic Mutual Information. Aleksandar Milosavljevic |
| 1994 | Stochastic Motif Extraction Using Hidden Markov Model. Yukiko Fujiwara, Minoru Asogawa, Akihiko Konagaya |
| 1994 | The Multi-Scale 3D-1D Compatibility Scoring for Inverse Protein Folding Protein. Kentaro Onizuka, Masayuki Akahoshi, Masato Ishikawa, Kiyoshi Asai |
| 1994 | The Prediction of Human Exons By Oligonucleotide Composition and Disriminant Analysis of Spliceable Open Reading Frames. Victor V. Solovyev, Asaf A. Salamov, Charles B. Lawrence |
| 1994 | The Prediction of the Degree of Exposure to Solvent of Amino Acid Residues Via Genetic Programming. Simon Handley |
| 1994 | The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome. Pankaj Agarwal, David J. States |
| 1994 | Toward Unification of Taxonomy Databases in a Distributed Environment. Hajime Kitakami, Yoshio Tateno, Takashi Gojobori |
| 1994 | Using Interval Logic for Order Assembly. Zhan Cui |
| 1994 | VQLM: A Visual Query Language for Macromolecular Structural Databases. Dawn M. Cohen, Kumar Vadaparty, Bill Dickinson, Hemanth Salem |