| 2008 | A fast and flexible method for the segmentation of aCGH data. Erez Ben-Yaacov, Yonina C. Eldar |
| 2008 | An environmental perspective on large-scale genome clustering based on metabolic capabilities. Gabi Kastenmüller, Johann Gasteiger, Hans-Werner Mewes |
| 2008 | An integrative approach for predicting interactions of protein regions. Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht |
| 2008 | Analysis of segmental duplications via duplication distance. Crystal L. Kahn, Benjamin J. Raphael |
| 2008 | Annotation of metagenome short reads using proxygenes. Daniel Dalevi, Natalia Ivanova, Konstantinos Mavrommatis, Sean D. Hooper, Ernest Szeto, Philip Hugenholtz, Nikos Kyrpides, Victor M. Markowitz |
| 2008 | Automatic decomposition of kinetic models of signaling networks minimizing the retroactivity among modules. Julio Saez-Rodriguez, Stefan Gayer, Martin Ginkel, Ernst Dieter Gilles |
| 2008 | ChIPmix: mixture model of regressions for two-color ChIP-chip analysis. Marie-Laure Martin-Magniette, Tristan Mary-Huard, Caroline Bérard, Stéphane Robin |
| 2008 | Clinically driven semi-supervised class discovery in gene expression data. Israel Steinfeld, Roy Navon, Diego Ardigò, Ivana Zavaroni, Zohar Yakhini |
| 2008 | Comparison of vocabularies, representations and ranking algorithms for gene prioritization by text mining. Shi Yu, Steven Van Vooren, Léon-Charles Tranchevent, Bart De Moor, Yves Moreau |
| 2008 | Comprehensive Yana Bromberg, Burkhard Rost |
| 2008 | Connect the dots: exposing hidden protein family connections from the entire sequence tree. Yaniv Loewenstein, Michal Linial |
| 2008 | Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. Rafael Najmanovich, Natalja Kurbatova, Janet M. Thornton |
| 2008 | ECCB 2008 Organization. |
| 2008 | ECCB'08 Proceedings, Seventh European Conference on Computational Biology, 22-26 September 2008, Cagliari, Italy |
| 2008 | Editorial. Anna Tramontano |
| 2008 | Efficient representation and Paulo G. S. da Fonseca, Katia S. Guimarães, Marie-France Sagot |
| 2008 | From minimal signed circuits to the dynamics of Boolean regulatory networks. Elisabeth Remy, Paul Ruet |
| 2008 | Functional coherence in domain interaction networks. Jayesh Pandey, Mehmet Koyutürk, Shankar Subramaniam, Ananth Grama |
| 2008 | Fusing time series expression data through hybrid aggregation and hierarchical merge. Elena Tsiporkova, Veselka Boeva |
| 2008 | Gain and loss of phosphorylation sites in human cancer. Predrag Radivojac, Peter H. Baenziger, Maricel G. Kann, Matthew E. Mort, Matthew W. Hahn, Sean D. Mooney |
| 2008 | Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities. Pei Gao, Antti Honkela, Magnus Rattray, Neil D. Lawrence |
| 2008 | HapCUT: an efficient and accurate algorithm for the haplotype assembly problem. Vikas Bansal, Vineet Bafna |
| 2008 | Improved network-based identification of protein orthologs. Nir Yosef, Roded Sharan, William Stafford Noble |
| 2008 | Inter-species normalization of gene mentions with GNAT. Jörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez |
| 2008 | Logical analysis of survival data: prognostic survival models by detecting high-degree interactions in right-censored data. Louis-Philippe Kronek, Anupama Reddy |
| 2008 | Logical modelling of the role of the Hh pathway in the patterning of the Aitor González, Claudine Chaouiya, Denis Thieffry |
| 2008 | Mining significant tree patterns in carbohydrate sugar chains. Kosuke Hashimoto, Ichigaku Takigawa, Motoki Shiga, Minoru Kanehisa, Hiroshi Mamitsuka |
| 2008 | Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry. Lukas Käll, John D. Storey, William Stafford Noble |
| 2008 | Optimal spliced alignments of short sequence reads. Fabio De Bona, Stephan Ossowski, Korbinian Schneeberger, Gunnar Rätsch |
| 2008 | Organization and integration of biomedical knowledge with concept maps for key peroxisomal pathways. A. M. Willemsen, Gerbert A. Jansen, J. C. Komen, S. van Hooff, H. R. Waterham, P. M. T. Brites, Ronald J. A. Wanders, Antoine H. C. van Kampen |
| 2008 | PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database. Chia-Ying Yang, Chao-Hui Chang, Ya-Ling Yu, Tsu-Chun Emma Lin, Sheng-An Lee, Chueh-Chuan Yen, Jinn-Moon Yang, Jin-Mei Lai, Yi-Ren Hong, Tzu-Ling Tseng, Kun-Mao Chao, Chi-Ying F. Huang |
| 2008 | PhyloDetect: a likelihood-based strategy for detecting microorganisms with diagnostic microarrays. Hubert Rehrauer, Susan Schönmann, Leo Eberl, Ralph Schlapbach |
| 2008 | Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases. Andrew Wei Xu, Benoît Alain, David Sankoff |
| 2008 | Protein structure alignment considering phenotypic plasticity. Gergely Csaba, Fabian Birzele, Ralf Zimmer |
| 2008 | RNA structure alignment by a unit-vector approach. Emidio Capriotti, Marc A. Martí-Renom |
| 2008 | SIRENE: supervised inference of regulatory networks. Fantine Mordelet, Jean-Philippe Vert |
| 2008 | Segment-based multiple sequence alignment. Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Döring, Cédric Notredame, Knut Reinert |
| 2008 | Temporal logic patterns for querying dynamic models of cellular interaction networks. Pedro T. Monteiro, Delphine Ropers, Radu Mateescu, Ana T. Freitas, Hidde de Jong |
| 2008 | Towards Sebastian Böcker, Florian Rasche |