| 2003 | A description of dynamical graphs associated to elementary regulatory circuits. Elisabeth Remy, Brigitte Mossé, Claudine Chaouiya, Denis Thieffry |
| 2003 | A novel approach to fold recognition using sequence-derived properties from sets of structurally similar local fragments of proteins. Torgeir R. Hvidsten, Andriy Kryshtafovych, Henryk Jan Komorowski, Krzysztof Fidelis |
| 2003 | A rapid method for detection of putative RNAi target genes in genomic data. Yair Horesh, Amihood Amir, Shulamit Michaeli, Ron Unger |
| 2003 | A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications. Bingwen Lu, Ting Chen |
| 2003 | Ab initio reconstruction of metabolic pathways. Frédéric Boyer, Alain Viari |
| 2003 | Analyzing resistance phenomena in HIV with bioinformatics methods. Thomas Lengauer |
| 2003 | Artificial gene networks for objective comparison of analysis algorithms. Pedro Mendes, Wei Sha, Keying Ye |
| 2003 | Biclustering microarray data by Gibbs sampling. Qizheng Sheng, Yves Moreau, Bart De Moor |
| 2003 | Comparative genomics of malaria parasites and its exploitation in a rodent malaria model. Andy Waters |
| 2003 | Computational detection of cis-regulatory modules. Stein Aerts, Peter Van Loo, Gert Thijs, Yves Moreau, Bart De Moor |
| 2003 | Discovery of significant rules for classifying cancer diagnosis data. Jinyan Li, Huiqing Liu, See-Kiong Ng, Limsoon Wong |
| 2003 | Divide-and-conquer multiple alignment with segment-based constraints. Michael Sammeth, Burkhard Morgenstern, Jens Stoye |
| 2003 | Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. Yoshinori Tamada, Sunyong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano |
| 2003 | Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. Christoph Dieterich, Ralf Herwig, Martin Vingron |
| 2003 | Extracting active pathways from gene expression data. Jean-Philippe Vert, Minoru Kanehisa |
| 2003 | Fast feature selection using a simple estimation of distribution algorithm: a case study on splice site prediction. Yvan Saeys, Sven Degroeve, Dirk Aeyels, Yves Van de Peer, Pierre Rouzé |
| 2003 | Finding optimal degenerate patterns in DNA sequences. Daisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama |
| 2003 | Finding subtle motifs by branching from sample strings. Alkes L. Price, Sriram Ramabhadran, Pavel A. Pevzner |
| 2003 | Flexible structure alignment by chaining aligned fragment pairs allowing twists. Yuzhen Ye, Adam Godzik |
| 2003 | Gene networks inference using dynamic Bayesian networks. Bruno-Edouard Perrin, Liva Ralaivola, Aurélien Mazurie, Samuele Bottani, Jacques Mallet, Florence d'Alché-Buc |
| 2003 | Gene prediction with a hidden Markov model and a new intron submodel. Mario Stanke, Stephan Waack |
| 2003 | HMM sampling and applications to gene finding and alternative splicing. Simon Cawley, Lior Pachter |
| 2003 | How significant is 98.5% 'junk' in mammalian genomes? Jürgen Brosius |
| 2003 | Inferring strengths of protein-protein interactions from experimental data using linear programming. Morihiro Hayashida, Nobuhisa Ueda, Tatsuya Akutsu |
| 2003 | MCMC genome rearrangement. István Miklós |
| 2003 | Metabolic economics and microbial proteome evolution. Hiroshi Akashi |
| 2003 | Modeling sequencing errors by combining Hidden Markov models. Claudio Lottaz, Christian Iseli, C. Victor Jongeneel, Philipp Bucher |
| 2003 | Predicting gene function in Saccharomyces cerevisiae. Amanda Clare, Ross D. King |
| 2003 | Probabilistic models for identifying regulation networks. Nir Friedman |
| 2003 | Proceedings of the European Conference on Computational Biology (ECCB 2003), September 27-30, 2003, Paris, France |
| 2003 | Reconstructing tumor genome architectures. Benjamin J. Raphael, Stanislav Volik, Colin C. Collins, Pavel A. Pevzner |
| 2003 | Searching for statistically significant regulatory modules. Timothy L. Bailey, William Stafford Noble |
| 2003 | Sources of genetic and phenotypic variability. François Taddei |
| 2003 | The proteome and the metabolome. Janet M. Thornton |
| 2003 | The shortest common supersequence problem in a microarray production setting. Sven Rahmann |
| 2003 | Upper bounds on maximum likelihood for phylogenetic trees. Michael D. Hendy, Barbara R. Holland |