| 2011 | An Autonomous DNA Nanodevice Captures pH Maps of Living Cells in Culture and in Vivo. Sunaina Surana, Souvik Modi, Yamuna Krishnan |
| 2011 | An Improved DNA-Sticker Addition Algorithm and Its Application to Logarithmic Arithmetic. Mark G. Arnold |
| 2011 | Autonomous Resolution Based on DNA Strand Displacement. Alfonso Rodríguez-Patón, Iñaki Sainz de Murieta, Petr Sosík |
| 2011 | Computing Maximal Kleene Closures That Are Embeddable in a Given Constrained DNA Language. Stavros Konstantinidis, Nicolae Santean |
| 2011 | Cooperation in an All-RNA Network. Nilesh Vaidya, Jessica Mellor, Niles Lehman |
| 2011 | Cooperative Assembly Systems. Vincent Danos, Heinz Koeppl, John Roger Wilson-Kanamori |
| 2011 | DNA Computing and Molecular Programming - 17th International Conference, DNA 2011, Pasadena, CA, USA, September 19-23, 2011. Proceedings Luca Cardelli, William M. Shih |
| 2011 | Designer DNA Architectures for Bionanotechnology. Hao Yan |
| 2011 | Exact Shapes and Turing Universality at Temperature 1 with a Single Negative Glue. Matthew J. Patitz, Robert T. Schweller, Scott M. Summers |
| 2011 | Graph-Theoretic Formalization of Hybridization in DNA Sticker Complexes. Robert Brijder, Joris J. M. Gillis, Jan Van den Bussche |
| 2011 | Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement Systems. Anne Condon, Alan J. Hu, Ján Manuch, Chris Thachuk |
| 2011 | Localized Hybridization Circuits. Harish Chandran, Nikhil Gopalkrishnan, Andrew Phillips, John H. Reif |
| 2011 | Modelling, Simulating and Verifying Turing-Powerful Strand Displacement Systems. Matthew R. Lakin, Andrew Phillips |
| 2011 | Multiple Molecular Spiders with a Single Localized Source - The One-Dimensional Case - (Extended Abstract). Oleg Semenov, Mark J. Olah, Darko Stefanovic |
| 2011 | Multivalent Random Walkers - A Model for Deoxyribozyme Walkers. Mark J. Olah, Darko Stefanovic |
| 2011 | One-Dimensional Staged Self-assembly. Erik D. Demaine, Sarah Eisenstat, Mashhood Ishaque, Andrew Winslow |
| 2011 | Synthesizing Small and Reliable Tile Sets for Patterned DNA Self-assembly. Tuomo Lempiäinen, Eugen Czeizler, Pekka Orponen |
| 2011 | The Computer Science of Molecular Programming. Jack H. Lutz |