| 2006 | "Reasoning" and "Talking" DNA: Can DNA Understand English? Kiranchand V. Bobba, Andrew Neel, Vinhthuy T. Phan, Max H. Garzon |
| 2006 | A Framework for Modeling DNA Based Molecular Systems. Sudheer Sahu, Bei Wang, John H. Reif |
| 2006 | A Mathematical Approach to Cross-Linked Structures in Viral Capsids: Predicting the Architecture of Novel Containers for Drug Delivery. Thomas Keef |
| 2006 | A New Readout Approach in DNA Computing Based on Real-Time PCR with TaqMan Probes. Zuwairie Ibrahim, John A. Rose, Yusei Tsuboi, Osamu Ono, Marzuki Khalid |
| 2006 | A Probabilistic Model of the DNA Conformational Change. Masashi Shiozaki, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita |
| 2006 | Abstraction Layers for Scalable Microfluidic Biocomputers. William Thies, John Paul Urbanski, Todd Thorsen, Saman P. Amarasinghe |
| 2006 | All NP-Problems Can Be Solved in Polynomial Time by Accepting Networks of Splicing Processors of Constant Size. Florin Manea, Carlos Martín-Vide, Victor Mitrana |
| 2006 | Automating the DNA Computer: Solving n-Variable 3-SAT Problems. Clifford R. Johnson |
| 2006 | Capabilities and Limits of Compact Error Resilience Methods for Algorithmic Self-assembly in Two and Three Dimensions. Sudheer Sahu, John H. Reif |
| 2006 | Computing with Spiking Neural P Systems: Traces and Small Universal Systems. Mihai Ionescu, Andrei Paun, Gheorghe Paun, Mario J. Pérez-Jiménez |
| 2006 | DNA Codes and Their Properties. Lila Kari, Kalpana Mahalingam |
| 2006 | DNA Computing, 12th International Meeting on DNA Computing, DNA 2006, Seoul, South Korea, June 5-9, 2006, Revised Selected Papers Chengde Mao, Takashi Yokomori |
| 2006 | DNA Hypernetworks for Information Storage and Retrieval. Byoung-Tak Zhang, Joo-Kyung Kim |
| 2006 | DNA Sequence Design by Dynamic Neighborhood Searches. Suguru Kawashimo, Hirotaka Ono, Kunihiko Sadakane, Masafumi Yamashita |
| 2006 | Design and Simulation of Self-repairing DNA Lattices. Urmi Majumder, Sudheer Sahu, Thomas H. LaBean, John H. Reif |
| 2006 | Development of DNA Relational Database and Data Manipulation Experiments. Masahito Yamamoto, Yutaka Kita, Satoshi Kashiwamura, Atsushi Kameda, Azuma Ohuchi |
| 2006 | Displacement Whiplash PCR: Optimized Architecture and Experimental Validation. John A. Rose, Ken Komiya, Satsuki Yaegashi, Masami Hagiya |
| 2006 | Experimental Validation of the Statistical Thermodynamic Model for Prediction of the Behavior of Autonomous Molecular Computers Based on DNA Hairpin Formation. Ken Komiya, Satsuki Yaegashi, Masami Hagiya, Akira Suyama, John A. Rose |
| 2006 | Fuzzy Forecasting with DNA Computing. Don Jyh-Fu Jeng, Junzo Watada, Berlin Wu, Jui-Yu Wu |
| 2006 | Gene Assembly Algorithms for Ciliates. Lucian Ilie, Roberto Solis-Oba |
| 2006 | Hairpin Structures Defined by DNA Trajectories. Michael Domaratzki |
| 2006 | In Search of Optimal Codes for DNA Computing. Max H. Garzon, Vinhthuy T. Phan, Sujoy Roy, Andrew Neel |
| 2006 | Length-Separating Test Tube Systems. Erzsébet Csuhaj-Varjú, Sergey Verlan |
| 2006 | Local Area Manipulation of DNA Molecules for Photonic DNA Memory. Rui Shogenji, Naoya Tate, Taro Beppu, Yusuke Ogura, Jun Tanida |
| 2006 | MethyLogic: Implementation of Boolean Logic Using DNA Methylation. Nevenka Dimitrova, Susannah Gal |
| 2006 | Minimal Parallelism for Polarizationless P Systems. Tseren-Onolt Ishdorj |
| 2006 | On Times to Compute Shapes in 2D Tile Self-assembly. Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boonsit Yimwadsana |
| 2006 | On the Complexity of Graph Self-assembly in Accretive Systems. Stanislav Angelov, Sanjeev Khanna, Mirkó Visontai |
| 2006 | P Systems with Active Membranes Characterize PSPACE. Petr Sosík, Alfonso Rodríguez-Patón |
| 2006 | Sequence Design for Stable DNA Tiles. Naoki Iimura, Masahito Yamamoto, Fumiaki Tanaka, Atsushi Kameda, Azuma Ohuchi |
| 2006 | Simulations of Microreactors: The Order of Things. Joseph Ibershoff, Jerzy W. Jaromczyk, Danny van Noort |
| 2006 | Spectrum of a Pot for DNA Complexes. Natasa Jonoska, Gregory L. McColm, Ana Staninska |
| 2006 | Uniquimer: A Bryan Wei, Zhengyu Wang, Yongli Mi |
| 2006 | Unravel Four Hairpins! Atsushi Kameda, Masahito Yamamoto, Azuma Ohuchi, Satsuki Yaegashi, Masami Hagiya |
| 2006 | Viral Genome Compression. Lucian Ilie, Liviu Tinta, Cristian Popescu, Kathleen A. Hill |