| 1993 | 3-D Docking of Protein Molecules. Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson |
| 1993 | A Fast Filtration Algorithm for the Substring Matching Problem. Pavel A. Pevzner, Michael S. Waterman |
| 1993 | A Linear Time Pattern Matching Algorithm Between a String and a Tree. Tatsuya Akutsu |
| 1993 | A New Editing based Distance between Unordered Labeled Trees. Kaizhong Zhang |
| 1993 | A Unifying Look at d-Dimensional Periodicities and Space Coverings. Mireille Régnier, Ladan Rostami |
| 1993 | An Algorithm for Approximate Tandem Repeats. Gad M. Landau, Jeanette P. Schmidt |
| 1993 | An Algorithm for Locating Non-Overlapping Regions of Maximum Alignment Score. Sampath Kannan, Eugene W. Myers |
| 1993 | Analysis of a String Edit Problem in a Probabilistic Framework (Extended Abstract). Guy Louchard, Wojciech Szpankowski |
| 1993 | Approximate String-Matching over Suffix Trees. Esko Ukkonen |
| 1993 | Combinatorial Pattern Matching, 4th Annual Symposium, CPM 93, Padova, Italy, June 2-4, 1993, Proceedings Alberto Apostolico, Maxime Crochemore, Zvi Galil, Udi Manber |
| 1993 | Covering a String. Costas S. Iliopoulos, Dennis W. G. Moore, Kunsoo Park |
| 1993 | Detecting False Matches in String Matching Algorithms. S. Muthukrishnan |
| 1993 | Exact and Approximation Algorithms for the Inversion Distance Between Two Chromosomes. John D. Kececioglu, David Sankoff |
| 1993 | Minimal Separators of Two Words. Emmanuelle Garel |
| 1993 | Multiple Sequence Comparison and n-Dimensional Image Reconstruction. Martin Vingron, Pavel A. Pevzner |
| 1993 | On Suboptimal Alignments of Biological Sequences. Dalit Naor, Douglas L. Brutlag |
| 1993 | On the Worst-Case Behaviour of Some Approximation Algorithms for the Shortest Common Supersequence of k Strings. Robert W. Irving, Campbell Fraser |
| 1993 | The Maximum Weight Trace Problem in Multiple Sequence Alignment. John D. Kececioglu |
| 1993 | Tight Comparison Bounds for the String Prefix-Matching Problem. Dany Breslauer, Livio Colussi, Laura Toniolo |
| 1993 | Two Dimensional Pattern Matching in a Digitized Image. Gad M. Landau, Uzi Vishkin |