| 2011 | A Antoine Deza, Frantisek Franek, Mei Jiang |
| 2011 | A Coarse-to-Fine Approach to Computing the Jesper Nielsen |
| 2011 | A Combinatorial Model of Phyllotaxis Perturbations in Yassin Refahi, Etienne Farcot, Yann Guédon, Fabrice Besnard, Teva Vernoux, Christophe Godin |
| 2011 | Algorithms on Grammar-Compressed Strings. Gad M. Landau |
| 2011 | Approximation Algorithms for Orienting Mixed Graphs. Michael Elberfeld, Danny Segev, Colin R. Davidson, Dana Silverbush, Roded Sharan |
| 2011 | Automatic Discovery of Patterns in Media Content. Nello Cristianini |
| 2011 | Combinatorial Pattern Matching - 22nd Annual Symposium, CPM 2011, Palermo, Italy, June 27-29, 2011. Proceedings Raffaele Giancarlo, Giovanni Manzini |
| 2011 | Computational Regulatory Genomics. Martin Vingron |
| 2011 | Counting Colours in Compressed Strings. Travis Gagie, Juha Kärkkäinen |
| 2011 | Edit Distance with Duplications and Contractions Revisited. Tamar Pinhas, Dekel Tsur, Shay Zakov, Michal Ziv-Ukelson |
| 2011 | Efficient Matching of Biological Sequences Allowing for Non-overlapping Inversions. Domenico Cantone, Salvatore Cristofaro, Simone Faro |
| 2011 | Efficient Seeds Computation Revisited. Michalis Christou, Maxime Crochemore, Costas S. Iliopoulos, Marcin Kubica, Solon P. Pissis, Jakub Radoszewski, Wojciech Rytter, Bartosz Szreder, Tomasz Walen |
| 2011 | Fast Error-Tolerant Quartet Phylogeny Algorithms. Daniel Gregory Brown, Jakub Truszkowski |
| 2011 | Faster Subsequence and Don't-Care Pattern Matching on Compressed Texts. Takanori Yamamoto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda |
| 2011 | Filling Scaffolds with Gene Repetitions: Maximizing the Number of Adjacencies. Haitao Jiang, Farong Zhong, Binhai Zhu |
| 2011 | Finding Approximate and Constrained Motifs in Graphs. Riccardo Dondi, Guillaume Fertin, Stéphane Vialette |
| 2011 | Forest Alignment with Affine Gaps and Anchors. Stefanie Schirmer, Robert Giegerich |
| 2011 | Frequent Submap Discovery. Stéphane Gosselin, Guillaume Damiand, Christine Solnon |
| 2011 | Improved MAX SNP-Hard Results for Finding an Edit Distance between Unordered Trees. Kouichi Hirata, Yoshiyuki Yamamoto, Tetsuji Kuboyama |
| 2011 | LRM-Trees: Compressed Indices, Adaptive Sorting, and Compressed Permutations. Jérémy Barbay, Johannes Fischer, Gonzalo Navarro |
| 2011 | Lempel-Ziv Factorization Revisited. Enno Ohlebusch, Simon Gog |
| 2011 | Lightweight BWT Construction for Very Large String Collections. Markus J. Bauer, Anthony J. Cox, Giovanna Rosone |
| 2011 | On Wavelet Tree Construction. German Tischler |
| 2011 | On the Weak Prefix-Search Problem. Paolo Ferragina |
| 2011 | Palindrome Pattern Matching. Tomohiro I, Shunsuke Inenaga, Masayuki Takeda |
| 2011 | Phylogenetic Footprinting and Consistent Sets of Local Aligments. Wolfgang Otto, Peter F. Stadler, Sonja J. Prohaska |
| 2011 | Polynomial-Time Approximation Algorithms for Weighted LCS Problem. Marek Cygan, Marcin Kubica, Jakub Radoszewski, Wojciech Rytter, Tomasz Walen |
| 2011 | Quick Greedy Computation for Minimum Common String Partitions. Isaac Goldstein, Moshe Lewenstein |
| 2011 | Real-Time Streaming String-Matching. Dany Breslauer, Zvi Galil |
| 2011 | Restricted Common Superstring and Restricted Common Supersequence. Raphaël Clifford, Zvi Gotthilf, Moshe Lewenstein, Alexandru Popa |
| 2011 | Self-indexing Based on LZ77. Sebastian Kreft, Gonzalo Navarro |
| 2011 | Simple Real-Time Constant-Space String Matching. Dany Breslauer, Roberto Grossi, Filippo Mignosi |
| 2011 | Space Lower Bounds for Online Pattern Matching. Raphaël Clifford, Markus Jalsenius, Ely Porat, Benjamin Sach |
| 2011 | Sparse and Truncated Suffix Trees on Variable-Length Codes. Takashi Uemura, Hiroki Arimura |
| 2011 | String Comparison and Lyndon-Like Factorization Using V-Order in Linear Time. David E. Daykin, Jacqueline W. Daykin, William F. Smyth |
| 2011 | Substring Range Reporting. Philip Bille, Inge Li Gørtz |
| 2011 | Succincter Text Indexing with Wildcards. Chris Thachuk |
| 2011 | Tractability Results for the Consecutive-Ones Property with Multiplicity. Cédric Chauve, Ján Manuch, Murray Patterson, Roland Wittler |
| 2011 | Tractability and Approximability of Maximal Strip Recovery. Laurent Bulteau, Guillaume Fertin, Minghui Jiang, Irena Rusu |
| 2011 | Unique Perfect Phylogeny Is Michel Habib, Juraj Stacho |