| 2009 | A Simple Algorithm for (l, d) Motif Search1. Dolly Sharma, Sanguthevar Rajasekaran |
| 2009 | A framework for the application of decision trees to the analysis of SNPs data. Linda Fiaschi, Jonathan M. Garibaldi, Natalio Krasnogor |
| 2009 | A method for improving protein localization prediction from datasets with outliers. Jiang Tian, Hong Gu, Wenqi Liu |
| 2009 | A multi-threaded DNA tag/anti-tag library generator for multi-core platforms. Arun Ravindran, Daniel J. Burns |
| 2009 | A novel LDA and PCA-based hierarchical scheme for metagenomic fragment binning. Hao Zheng, Hongwei Wu |
| 2009 | A system for recognition of biological patterns in toxins using computational intelligence. Bernardo Penna Resende de Carvalho, Thais Melo Mendes, Ricardo de Souza Ribeiro, Ricardo Fortuna, José Marcos Veneroso, Maurício de Alvarenga Mudado |
| 2009 | An application of the metric access methods to the mass spectrometry data. Jirí Novák, David Hoksza |
| 2009 | An approach for RNA secondary structure prediction based on Bayesian network. Tianhua Wu, Zhidong Deng, Dandan Song |
| 2009 | An assignment walk through 3D NMR spectrum. Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz |
| 2009 | An automatic gene ontology software tool for bicluster and cluster comparisons. Fadhl M. Al-Akwaa, Yasser M. Kadah |
| 2009 | Application of machine learning approaches on quantitative structure activity relationships. Mariusz Butkiewicz, Ralf Mueller, Danilo Selic, Eric Dawson, Jens Meiler |
| 2009 | Assessing the impact of network depth on the analysis of PPI networks: A case study. Jaine K. Blayney, Haiying Wang, Huiru Zheng, Francisco Azuaje |
| 2009 | Bioinformatics: Implementation of a proposed upgraded Smith-Waterman algorithm for local alignment. Md. Shihabuddin Sadi, Abu Z. Mohammad Sami, Imtiaz Uddin Ahmed, Abdullahil Baki Md. Ruhunnabi, Nirmalendu Das |
| 2009 | Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. Jennifer Hallinan, Matthew R. Pocock, Stephen G. Addinall, David A. Lydall, Anil Wipat |
| 2009 | Comparison of feature selection techniques for viral DNA replication origin prediction. Raul Cruz-Cano, Ming-Ying Leung |
| 2009 | DDPIn - Distance and density based protein indexing. David Hoksza |
| 2009 | DNA error correcting codes: No crossover. Daniel A. Ashlock, Sheridan K. Houghten |
| 2009 | Data synthesis and tool development for exploring imaging genomic patterns. Sungeun Kim, Li Shen, Andrew J. Saykin, John D. West |
| 2009 | Degenerate primer selection algorithms. Dolly Sharma, Sudha Balla, Sanguthevar Rajasekaran, Nikoletta DiGirolamo |
| 2009 | Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes. Isye Arieshanti, Mikael Bodén, Stefan Maetschke, Fabian A. Buske |
| 2009 | Diagnostic character location within the cryptic skipper butterfly species complex with an evolutionary algorithm. Daniel A. Ashlock, Taika von Königslöw |
| 2009 | Emotion recognition with consideration of facial expression and physiological signals. Chuan-Yu Chang, Jeng-Shiun Tsai, Chi-Jane Wang, Pau-Choo Chung |
| 2009 | Fast algorithms for detecting overlapping functional modules in protein-protein interaction networks. Peng-Gang Sun, Lin Gao |
| 2009 | Fuzzy rule base classifier fusion for protein mass spectra based ovarian cancer diagnosis. Amin Assareh, L. Gwenn Volkert |
| 2009 | Goal Driven Analysis of cDNA Microarray Data. Youlian Pan, Jitao Zou, Yi Huang, Ziying Liu, Sieu Phan, Fazel Famili |
| 2009 | Haplotype inference using a genetic algorithm. Dongsheng Che, Haibao Tang, Yinglei Song |
| 2009 | Improved prediction of trans-membrane spans in proteins using an artificial neural network. Julia Koehler, Ralf Mueller, Jens Meiler |
| 2009 | Knee MR image segmentation combining contextual constrained neural network and level set evolution. Haw-Chang Lan, Tsai-Rong Chang, Wen-Ching Liao, Yi-Nung Chung, Pau-Choo Chung |
| 2009 | Modeling oncology gene pathways network with multiple genotypes and phenotypes via a copula method. Le Bao, Zhou Zhu, Jingjing Ye |
| 2009 | Nerve graft selection for peripheral nerve regeneration using neural networks trained by a hybrid ACO/PSO method. Matthew Conforth, Yan Meng, Chandra Valmikinathan, Xiaojun Yu |
| 2009 | Performance prediction for RNA design using parametric and non-parametric regression models. Denny C. Dai, Kay C. Wiese |
| 2009 | Predicting protein subcellular locations for Gram-negative bacteria using neural networks ensemble. Junwei Ma, Wenqi Liu, Hong Gu |
| 2009 | Predicting protein-protein interactions using numerical associational features. Waleed Aljandal, William H. Hsu, Jing Xia |
| 2009 | Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2009, Nashville, TN, USA, March 30 - April 2, 2009 |
| 2009 | Protein fold recognition with adaptive local hyperplane algorithm. Vojislav Kecman, Tao Yang |
| 2009 | Protein secondary structure prediction using rule induction from coverings. Leong Lee, Jennifer L. Leopold, Ronald L. Frank, Anne M. Maglia |
| 2009 | SARNA-ensemble-predict: The effect of different dissimilarity metrics on a novel ensemble-based RNA secondary structure prediction algorithm. Herbert H. Tsang, Kay C. Wiese |
| 2009 | Shape modeling and clustering of white matter fiber tracts using fourier descriptors. Xuwei Liang, Qi Zhuang, Ning Cao, Jun Zhang |
| 2009 | Simulation of the impact of retroviruses on genome organization of an artificial organism. Daniel A. Ashlock, Wendy Ashlock |
| 2009 | Statistical comparison of color model-classifier pairs in hematoxylin and eosin stained histological images. Mutlu Mete, Umit Topaloglu |
| 2009 | Steady-state analysis of genetic regulatory networks modeled by nonlinear ordinary differential equations. Haixin Wang, Lijun Qian, Edward R. Dougherty |
| 2009 | The analysis of microarray datasets using a genetic programming. Chun-Gui Xu, Kunhong Liu, De-Shuang Huang |
| 2009 | Using diffusion characters for the taxonomy of self-organizing social networks. Daniel A. Ashlock, Colin Lee |
| 2009 | rnaDesign: Local search for RNA secondary structure design. Denny C. Dai, Herbert H. Tsang, Kay C. Wiese |