| 2008 | 3D-Shape analysis of the HIV-1 protease ligand binding site. Sunil Kumar, Rajni Garg, Srinivas R. Alla, Xiaoyu Zhang, Vivek K. Jalahalli |
| 2008 | A Wrapper Feature Selection Method Based on Simulated Annealing Algorithm for Prostate Protein Mass Spectrometry Data. Yifeng Li, Yihui Liu |
| 2008 | A graph-based representation of Gene Expression profiles in DNA microarrays. Alfredo Benso, Stefano Di Carlo, Gianfranco Politano, Luca Sterpone |
| 2008 | A hybrid clustering/evolutionary algorithm for RNA folding. Kay C. Wiese, Andrew Hendriks |
| 2008 | A model of emotion in the prisoner's dilemma. Dan Ashlock, Nicholas Rogers |
| 2008 | An information theoretic approach for the discovery of irregular and repetitive patterns in genomic data. Willard Davis, Ananth Kalyanaraman, Diane J. Cook |
| 2008 | Automated optic nerve head image fusion of nonhuman primate eyes using heuristic optimization algorithm. Hua Cao, Bahram Khoobehi, S. Sitharama Iyengar |
| 2008 | Cancer classification with incremental gene selection based on DNA microarray data. Jin-Hyuk Hong, Sung-Bae Cho |
| 2008 | Characterization of extremal epidemic networks with diffusion characters. Dan Ashlock, Colin Lee |
| 2008 | Classification of mouse fRNA genes using evolved neural networks. Mars Cheung, Gary B. Fogel |
| 2008 | Classifying synthetic and biological DNA sequences with side effect machines. Dan Ashlock, Elizabeth Warner |
| 2008 | Combining multiple types of biological data in constraint-based learning of gene regulatory networks. Mehmet Tan, Mohammed Al-Shalalfa, Reda Alhajj, Faruk Polat |
| 2008 | Discovering novel cancer therapies: A computational modeling and search approach. Arthur W. Mahoney, Brian G. Smith, Nicholas S. Flann, Gregory J. Podgorski |
| 2008 | Distributed Peer-to-Peer Cooperative Partitional-Divisive Clustering for gene expression datasets. Rasha F. Kashef, Mohamed S. Kamel |
| 2008 | Evolution strategy with greedy probe selection heuristics for the non-unique oligonucleotide probe selection problem. Lili Wang, Alioune Ngom, Robin Gras, Luis Rueda |
| 2008 | Exploring 3D-QSAR pharmacophore mapping of azaphenanthrenone derivatives for mPGES-1 inhibition Using HypoGen technique. Winston Yu-Chen Chen, Po-Yuan Chen, Calvin Yu-Chian Chen, Jing-Gung Chung |
| 2008 | Exploring chaos automata for protein sequences. Deborah Stoffer, L. Gwenn Volkert |
| 2008 | Fitness directed intervention crossover approaches applied to bio-scheduling problems. Paul Michael Godley, David E. Cairns, Julie Cowie, John A. W. McCall |
| 2008 | Gene ranking through the integration of synchronization experiments. Alan E. Alex, Sumeet Dua, Pradeep Chowriappa |
| 2008 | Granular decision fusion systems for effective protein methylation pPrediction. Zejin Jason Ding, You Feng, Yujun George Zheng, Yan-Qing Zhang |
| 2008 | Improving feature representation of natural language gene functional annotations using automatic term expansion. Ji He |
| 2008 | Methods and strategies for construction of a phylogeny-adaptive hormone response element consensus model. Jesslyn Saw, Maria Stepanova, Lin Feng |
| 2008 | Mining sequence features for DNA-binding site prediction. Jing Hu, Changhui Yan |
| 2008 | Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks. Jennifer Hallinan, Anil Wipat |
| 2008 | Neuro-fuzzy classification of the Rhagoletis pomonella species group using digitized wing structures. Chengpeng Bi, Michael C. Saunders, Bruce A. McPheron |
| 2008 | Numerical representation of DNA sequences based on genetic code context and its applications in periodicity analysis of genomes. Changchuan Yin, Stephen S.-T. Yau |
| 2008 | PCA-based linear combinations of oligonucleotide frequencies for metagenomic DNA fragment binning. Hongwei Wu |
| 2008 | Parallel multi-objective algorithms for the molecular docking problem. Jean-Charles Boisson, Laetitia Jourdan, El-Ghazali Talbi, Dragos Horvath |
| 2008 | Pattern recognition for brain-computer interface on disabled subjects using a wavelet transformation. Thiago Bassani, Júlio C. Nievola |
| 2008 | Predicting translation initiation sites using a multi-agent architecture empowered with reinforcement learning. Jia Zeng, Reda Alhajj |
| 2008 | ProLoc-rGO: Using rule-based knowledge with Gene Ontology terms for prediction of protein subnuclear localization. Wen-Lin Huang, Chun-Wei Tung, Shih-Wen Ho, Shinn-Ying Ho |
| 2008 | Proceedings of the 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2008, Sun Valley Resort, Sun Valley, Idaho, USA, September 15-17, 2008 |
| 2008 | Reassessing the limit of data integration for the prediction of protein-protein interactions in Saccharomyces cerevisiae. Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje |
| 2008 | Reverse engineering of the transcriptional subnetwork in the yeast cell cycle pathway using Dynamic Bayesian Networks and evolutionary search. Maryam Salehi, Paul G. Young, Parvin Mousavi |
| 2008 | Reverse engineering time series of gene expression data using Dynamic Bayesian networks and covariance matrix adaptation evolution strategy with explicit memory. Maryam Salehi, Alan Ableson, Parvin Mousavi |
| 2008 | SARNA-Predict-pk: Predicting RNA secondary structures including pseudoknots. Herbert H. Tsang, Kay C. Wiese |
| 2008 | Temporal and structural analysis of biological networks in combination with microarray data. Chang Hun You, Lawrence B. Holder, Diane J. Cook |
| 2008 | Transience in the simulation of ring species. Dan Ashlock, Taika von Konigslow, Elizabeth Clare, Wendy Ashlock |
| 2008 | Using hybrid GA-ANN to predict biological activity of HIV protease inhibitors. Srinivas R. Alla, Akmal Aulia, Sunil Kumar, Rajni Garg |
| 2008 | Very large scale ReliefF for genome-wide association analysis. Margaret J. Eppstein, Paul Haake |