| 2005 | A Genetic Algorithm Approach for Discovering Diagnostic Patterns in Molecular Measurement Data. David Schaffer, Angel Janevski, Mark Simpson |
| 2005 | A Hybrid CI-Based Knowledge Discovery System on Microarray Gene Expression Data. Yuchun Tang, Yuanchen He, Yan-Qing Zhang, Zhen Huang, Xiaohua Hu, Rajshekhar Sunderraman |
| 2005 | A Kernel Method for MicroRNA Target Prediction Using Sensible Data and Position-Based Features. Sung-Kyu Kim, Jin-Wu Nam, Wha-Jin Lee, Byoung-Tak Zhang |
| 2005 | A Machine Leaning Approach to Resolving Incongruence in Molecular Phylogenies and Visualization Analysis. Xiaoxu Han |
| 2005 | A Neural Network for Predicting Protein Disorder using Amino Acid Hydropathy Values. Deborah Stoffer, L. Gwenn Volkert |
| 2005 | A New Distance Measure of RNA Ensembles and Its Application to Phylogenetic Tree Construction. Sven Siebert, Rolf Backofen |
| 2005 | A New Semi-Supervised Subspace Clustering Algorithm on Fitting Mixture Models. Young Bun Kim, Jean Gao |
| 2005 | A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites. Valmik Desai, Purvesh Khatri, Arina Done, Aviva Friedman, Michael A. Tainsky, Sorin Draghici |
| 2005 | A Novel Variation Operator for More Rapid Evolution of DNA Error Correcting Codes. Daniel A. Ashlock, Sheridan K. Houghten |
| 2005 | A Transcriptional Approach to Gene Clustering. Ilias Tagkopoulos |
| 2005 | An Architecture Combining Bayesian segmentation and Neural Network Ensembles for Protein Secondary Structure Prediction. Niranjan P. Bidargaddi, Madhu Chetty, Joarder Kamruzzaman |
| 2005 | An Efficient Approach to Detect a Protein Community from a Seed. Daniel Duanqing Wu, Xiaohua Hu |
| 2005 | An Efficient Sequential RBF Network for Gene Expression-Based Multi-category Classification. Runxuan Zhang, Narasimhan Sundararajan, Guang-Bin Huang, Paramasivan Saratchandran |
| 2005 | An Internet-based Melanoma Diagnostic System - Toward the Practical Application. Hitoshi Iyatomi, Hiroshi Oka, Masahiro Hashimoto, Masaru Tanaka, Koichi Ogawa |
| 2005 | Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification. Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman |
| 2005 | Artificial Neural Network Analysis of DNA Microarray-based Prostate Cancer Recurrence. Leif E. Peterson, Mustafa Ozen, Halime Erdem, Andrew Amini, Lori Gomez, Colleen C. Nelson, Michael Ittmann |
| 2005 | Biclustering of Gene Expression Data Using Genetic Algorithm. Anupam Chakraborty, Hitashyam Maka |
| 2005 | Biological Sequence Prediction using General Fuzzy Automata. Mansoor Doostfatemeh, Stefan C. Kremer |
| 2005 | Cooperative Rec-I-DCM3: A Population-Based Approach for Reconstructing Phylogenies. Tiffani L. Williams, Marc Smith |
| 2005 | Depth Annotation of RNA Folds for Secondary Structure Motif Search. Daniel A. Ashlock, Justin Schonfeld |
| 2005 | Diffuse Large B-cell Lymphoma Classification Using Genetic Programming Classifier. Supoj Hengpraprohm, Prabhas Chongstitvatana |
| 2005 | ERP signal identification of Individuals at Risk for Alcoholism using Learning Vector Quantization Network. Carla D. Lopes, Erik Schüler, Paulo Engel, Altamiro Amadeu Susin |
| 2005 | Evaluating Robustness of Algorithm for Microsatellite Marker Genotyping. Toshiko Matsumoto, Ryo Nakashige |
| 2005 | Evolutionary Granular Kernel Trees and Applications in Drug Activity Comparisons. Bo Jin, Yan-Qing Zhang, Binghe Wang |
| 2005 | Extracting Features from Protein Sequences Using Chinese Segmentation Techniques for Subcellular Localization. Yang Yang, Bao-Liang Lu |
| 2005 | Feature Selection Based on Physicochemical Properties of Redefined N-term Region and C-term Regions for Predicting Disorder. Kana Shimizu, Yoichi Muraoka, Shuichi Hirose, Tamotsu Noguchi |
| 2005 | Feature Selection for Classification with Proteomic Data of Mixed Quality. Elena Marchiori, Niels H. H. Heegaard, Connie R. Jimenez, Mikkel West-Nielsen |
| 2005 | Feature Selection for Microarray Data Using Least Squares SVM and Particle Swarm Optimization. E. Ke Tang, Ponnuthurai N. Suganthan, Xin Yao |
| 2005 | Feedback Memetic Algorithms for Modeling Gene Regulatory Networks. Christian Spieth, Felix Streichert, Jochen Supper, Nora Speer, Andreas Zell |
| 2005 | Functional Distances for Genes Based on GO Feature Maps and their Application to Clustering. Nora Speer, Holger Fröhlich, Christian Spieth, Andreas Zell |
| 2005 | Fuzzy Profile Hidden Markov Models for Protein Sequence Analysis. Niranjan P. Bidargaddi, Madhu Chetty, Joarder Kamruzzaman |
| 2005 | GEMSCORE: A New Empirical Energy Function for Protein Folding. Yi-Yuan Chiu, Jenn-Kang Hwang, Jinn-Moon Yang |
| 2005 | Gene Classification Using Codon Usage Patterns and SVMs. Jianmin Ma, Minh Ngoc Nguyen, Gavyn Pang, Jagath C. Rajapakse |
| 2005 | Handling Data Sparseness in Gene Network Reconstruction. George Barreto Bezerra, Tiago V. Barra, Fernando J. Von Zuben, Leandro Nunes de Castro |
| 2005 | Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming. Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikael Bodén |
| 2005 | Hybrid PCA and LDA Analysis of Microarray Gene Expression Data. Yijuan Lu, Qi Tian, Maribel Sanchez, Yufeng Wang |
| 2005 | Hypermotifs: Novel Discriminatory Patterns for Nucleotide Sequences and their Application to Core Promoter Prediction in Eukaryotes. Carey Pridgeon, David Corne |
| 2005 | Identification of Functional RNA Genes Using Evolved Neural Networks. Mars Cheung, Gary B. Fogel |
| 2005 | Improving Protein Function Prediction Using the Hierarchical Structure of the Gene Ontology. Roman Eisner, Brett Poulin, Duane Szafron, Paul Lu, Russell Greiner |
| 2005 | Improving Protein Secondary-Structure Prediction by Predicting Ends of Secondary-Structure Segments. Uros Midic, A. Keith Dunker, Zoran Obradovic |
| 2005 | Interpretable Prediction of Protein Stability Changes upon Mutation by Using Decision Tree. Larry Huang, Wen-Lin Huang, Shinn-Ying Ho, Shiow-Fen Hwang |
| 2005 | Intrinsic Disorder and Protein modifications: Building an SVM Predictor for Methylation. Kenneth Daily, Predrag Radivojac, A. Keith Dunker |
| 2005 | LVQ Approach Using AA Indices for Protein Subcellular Localisation Prediction. Kok-Sin Toh, Minh Ngoc Nguyen, Jagath C. Rajapakse |
| 2005 | Modeling Transcriptional Regulation in Chondrogenesis Using Particle Swarm Optimization. Yunlong Liu, Hiroki Yokota |
| 2005 | Multi-class Protein Subcellular Localization Classification Using Support Vector Machines. Peng Wai Meng, Jagath C. Rajapakse |
| 2005 | Multicategory Classification using Extended SVM-RFE and Markov Blanket on SELDITOF Mass Spectrometry Data. Jung Hun Oh, Jean Gao, Animesh Nandi, Prem Gurnani, Lynne Knowles, John Schorge, Kevin P. Rosenblatt |
| 2005 | Multiple Sequence Alignment Containing a Sequence of Regular Expressions. Abdullah N. Arslan |
| 2005 | NMR Analysis of RNA Bulged structures: Tabu Search Application in NOE Signal Assignment. Marta Szachniuk, Lukasz Popenda, Zofia Gdaniec, Ryszard W. Adamiak, Jacek Blazewicz |
| 2005 | Network Motifs, Feedback Loops and the Dynamics of Genetic Regulatory Networks. Jennifer Hallinan, Paul T. Jackway |
| 2005 | Neural Spike Communication under Noisy Environments. Noriyasu Homma, Koh Fuchigami, Madan M. Gupta |
| 2005 | Neuro-fuzzy Prediction of Biological Activity and Rule Extraction for HIV-1 Protease Inhibitors. Razvan Andonie, Levente Fabry-Asztalos, Catharine Collar, Sarah Abdul-Wahid, Nicholas Salim |
| 2005 | Novel Algorithm for MALDI-TOF Baseline Drift Removal. Joseph Kolibal, Daniel Howard |
| 2005 | Optimized Kernel Machine for Cancer Classification Using Gene Expression Data. Huilin Xiong, Xue-wen Chen |
| 2005 | Pathway Analyst--Automated Metabolic Pathway Prediction. Luca Pireddu, Brett Poulin, Duane Szafron, Paul Lu, David S. Wishart |
| 2005 | Pathway Optimization of Mycobacterium Tuberculosis Drug Response Networks. Chien-Feng Huang, Christian Forst, Madeline Tiee |
| 2005 | Predicting Peroxisomal Proteins. John Hawkins, Mikael Bodén |
| 2005 | Predicting Single Genes Related to Immune-Relevant Processes. Christian Spieth, Felix Streichert, Nora Speer, Christian Sinzger, Kathrin Eberhard, Andreas Zell |
| 2005 | Predicting Structural Disruption of Proteins Caused by Crossover (based on Amino Acid Sequence). Denis C. Bauer, Mikael Bodén, Ricarda Thier, Zheng Yuan |
| 2005 | Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference. Clare Bates Congdon, Charles Fizer, Noah W. Smith, H. Rex Gaskins, Joseph C. Aman, Gerardo M. Nava, Carolyn J. Mattingly |
| 2005 | Proceedings of the 2005 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2005, Embassy Suites Hotel La Jolla, La Jolla, CA, USA, November 14 & 15, 2005 |
| 2005 | Protein-Protein Interaction Prediction Based on Sequence Data by Support Vector Machine with Probability Assignment. Jiankuan Ye, Casimir A. Kulikowski, Ilya B. Muchnik |
| 2005 | Reverse Engineering Non-Linear Gene Regulatory Networks Based on the Bacteriophage lambda cI Circuit. Jochen Supper, Christian Spieth, Andreas Zell |
| 2005 | Robust Algorithm for Finding Weak Motifs. Xiao Yang, Jagath C. Rajapakse |
| 2005 | Segment and Combine Approach for Biological Sequence Classification. Pierre Geurts, Antia Blanco Cuesta, Louis Wehenkel |
| 2005 | Selected String Representation for Whole Genomes. Xiaomeng Wu, Guohui Lin |
| 2005 | Selection of Genetically Diverse Recombinant Inbreds with an Ordered Gene Evolutionary Algorithm. Daniel A. Ashlock, Ruth Swanson, Patrick S. Schnable |
| 2005 | System Identification and Nonlinear Factor Analysis for Discovery and Visualization of Dynamic Gene Regulatory Pathways. Alireza Darvish, Kayvan Najarian, Dong Hyun Jeong, William Ribarsky |
| 2005 | The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space. Eleazar Eskin, Sagi Snir |
| 2005 | Toward Protein Structure Analysis with Self-Organizing Maps. Lutz Hamel, Gongqin Sun, Jing Zhang |
| 2005 | Training Reformulated Radial Basis Function Neural Networks Capable of Identifying Uncertainty in the Recognition of Videotaped Neonatal Seizures. Nicolaos B. Karayiannis, Yaohua Xiong |
| 2005 | Truncated Profile Hidden Markov Models. Scott F. Smith |
| 2005 | Two-Phase EA/k-NN for Feature Selection and Classification in Cancer Microarray Datasets. Thorhildur Juliusdottir, David Corne, Ed Keedwell, Ajit Narayanan |
| 2005 | Using a Bayesian Posterior Density in the Design of Perturbation Experiments. Anthony Almudevar, Peter Salzman |
| 2005 | Utilizing Artificial Neural Networks to Elucidate Serum Biomarker Patterns Which Discriminate Between Clinical Stages in Melanoma. Lee Lancashire, Selma Ugurel, Colin Creaser, Dirk Schadendorf, Robert C. Rees, Graham R. Ball |
| 2005 | Utilizing Domain Knowledge in Developing Robust Neural Network Models for Peptide-Allele Binding Prediction. Vasileios Megalooikonomou, Despina Kontos, Nicholas DeClaris, Pedro Cano |