| 2009 | 3D Reconstruction of Colon Segments from Colonoscopy Images. DongHo Hong, Wallapak Tavanapong, Johnny Wong, Jung-Hwan Oh, Piet C. de Groen |
| 2009 | A Computational Approach to Detect CNVs Using High-throughput Sequencing. Myungjin Moon, Jaegyoon Ahn, Youngmi Yoon, Chihyun Park, Sanghyun Park, Jeehee Yoon |
| 2009 | A Data Mining Approach to Predicting Phylum for Microbial Organisms Using Genome-Wide Sequence Data. Rao M. Kotamarti, Douglas W. Raiford, Michael L. Raymer, Margaret H. Dunham |
| 2009 | A Generic Framework of Integrating Segmentation and Registration. JongHyun Park, Wanhyun Cho, Soon-Young Park, Junsik Lim, Soo-Hyung Kim, Gueesang Lee |
| 2009 | A Human DNA Methylation Site Predictor Based on SVM. Yi-Ming Sun, Wei-Li Liao, Hsien-Da Huang, Baw-Jhiune Liu, Cheng-Wei Chang, Jorng-Tzong Horng, Li-Ching Wu |
| 2009 | A Hybrid Feature Selection Method Using Gene Expression Data. Li-Yeh Chuang, Kuo-Chuan Wu, Cheng-Hong Yang |
| 2009 | A Multidimensional Flow Cytometry Data Classification. Ming-Chih Shih, Shou-Hsuan Stephen Huang, Chung-Che Jeff Chang |
| 2009 | A New Method to Combine Heterogeneous Data Sources for Candidate Gene Prioritization. Yongjin Li, Jagdish Chandra Patra, Jiabao Sun |
| 2009 | A Novel Approach for Automatic Number of Clusters Detection in Microarray Data Based on Consensus Clustering. Xuan Vinh Nguyen, Julien Epps |
| 2009 | A Novel Approach for Motif Identification in Unaligned Molecular Sequences. Rong-Ming Chen, M. T. Hou, Jeffrey J. P. Tsai |
| 2009 | A Novel Biological Computation Method for Deriving and Resolving Discernibility Relations. Ikno Kim, Junzo Watada, Jui-Yu Wu, Yu-Yi Chu |
| 2009 | A Platform for Identifying MicroRNA Targeting Genes. Chia-Wei Weng, Chang-Chih Chiang, Chien-Hung Huang, Ka-Lok Ng |
| 2009 | A Practical Edit-Distance Model for RNA Secondary-Structure Comparison. Chan-Shuo Wu, Guan-Shieng Huang |
| 2009 | AESNB: Active Example Selection with Naive Bayes Classifier for Learning from Imbalanced Biomedical Data. Min Su Lee, Je-Keun Rhee, Byoung-Hee Kim, Byoung-Tak Zhang |
| 2009 | ATRIPPI: An Atom-residue Preference Scoring Function for Protein-protein Interactions. Kang-Ping Liu, Lu-Shian Chang, Jinn-Moon Yang |
| 2009 | Algorithms Based on Density and Shared Neighbors for Functional Modules Identification in PPI Networks. Peng-Gang Sun, Lin Gao |
| 2009 | Alternative Feature Mapping for Heterogeneous Gene Data Classification. Victor C. Liang, Vincent T. Y. Ng |
| 2009 | An Integrative Tool for Gene Regulatory Network Reconstruction Based on Microarray Data. Jong-Waye Ou, Rouh-Mei Hu, Rong-Ming Chen, C. Y. Tang, Jeffrey J. P. Tsai |
| 2009 | Analysis of Autism Prevalence and Neurotoxins Using Combinatorial Fusion and Association Rule Mining. Christina Schweikert, Yanjun Li, David Dayya, David Yens, Martin Torrents, D. Frank Hsu |
| 2009 | Anomaly-free Prediction of Gene Ontology Annotations Using Bayesian Networks. Marco Tagliasacchi, Marco Masseroli |
| 2009 | Applied GM(0, N) Model in the Study of Influence Factor in Preterm Neonates. Mei-Li You, Hsiao-Ying Chen, Shu-Peng Liu, Kun-Li Wen |
| 2009 | ArrayQ: Querying Microarray Expressions for Relevant Pathways. Shahriyar Hossain, Cherie Southwood, Hasan M. Jamil, Alexander Gow |
| 2009 | Asymptotics of Canonical RNA Secondary Structures. Peter Clote, Evangelos Kranakis, Danny Krizanc |
| 2009 | Automated Sleep Staging Using Single EEG Channel for REM Sleep Deprivation. Yu-Hsun Lee, Yong-Sheng Chen, Li-Fen Chen |
| 2009 | Automatic Tumor Diagnosis for Breast Ultrasound Using 3D Sub-volume Registration. Chii-Jen Chen, Ruey-Feng Chang, Dar-Ren Chen |
| 2009 | Beamformer-Based Spatiotemporal Imaging of Correlated Brain Activities. I-Tzu Chen, Yong-Sheng Chen, Li-Fen Chen |
| 2009 | Brain Tissue Classification Using Independent Vector Analysis (IVA) for Magnetic Resonance Image. Yaw-Jiunn Chiou, Hsian-Min Chen, Jyh Wen Chai, Clayton Chi-Chang Chen, Yen Chieh Ouyang, Wu-Chung Su, Ching-Wen Yang, San-Kan Lee, Chein-I Chang |
| 2009 | Combining Agent-Based Models with Stochastic Differential Equations for Gene Regulatory Networks. Tse-Yi Wang, Kuang-Chi Chen, D. Frank Hsu, Cheng-Yan Kao |
| 2009 | Constructing Yeast Phenotypic Gene Network Using Morphological Inclusion Relations. Natsumi Abe, Jun Sese |
| 2009 | Data Matching for Physical Integration of Biochemical Pathway Databases. Jyh-Jong Tsay, Bo-Liang Wu, Chien-Wen Chen |
| 2009 | Data Mining Techniques for the Identification of Genes with Expression Levels Related to Breast Cancer Prognosis. Gabriele Giarratana, Marco Pizzera, Marco Masseroli, Enzo Medico, Pier Luca Lanzi |
| 2009 | Describing Dynamic Biological Systems in SPDL and SCDL. Charles C. N. Wang, David A. Hecht, Han C. W. Hsiao, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai |
| 2009 | EEG-Based Spatial Navigation Estimation in a Virtual Reality Driving Environment. Chin-Teng Lin, Fu-Shu Yang, Te-Chung Chiou, Li-Wei Ko, Jeng-Ren Duann, Klaus Gramann |
| 2009 | Efficiency Enhancement of Protein Folding for Complete Molecular Simulation via Hardware Computing. Wen-Tsai Sung |
| 2009 | Empirical Probability Functions Derived from Dihedral Angles for Protein Structure Prediction. Qiwen Dong, Xin Geng, Shuigeng Zhou, Jihong Guan |
| 2009 | Enzyme Relational Network Reveals Target Enzymes within Metabolic Submodules. Chalothorn Liamwirat, Supapon Cheevadhanarak, Asawin Meechai, Sakarindr Bhumiratana |
| 2009 | Expectation Maximization driven Geodesic Active Contour with Overlap Resolution (EMaGACOR): Application to Lymphocyte Segmentation on Breast Cancer Histopathology. Hussain Fatakdawala, Ajay Basavanhally, Jun Xu, Gyan Bhanot, Shridar Ganesan, Michael D. Feldman, John Tomaszewski, Anant Madabhushi |
| 2009 | Exploring the Receptor-Based Virtual Screening Study of the Aromatic Substituents for the Hepatitis C Virus NS5B Polymerase by Docking and Scoring. Po-Yuan Chen, Wei-Tse Hsu, Mien-De Jhuo, Tzu-Hurng Cheng |
| 2009 | Faster and Active Surveillance of Hospital-Acquired Infections: A Model for Settings with High Sensitivity Predictors. Yao-Wen Chung, Yu-Sheng Lo, Wen-Sen Lee, Min-Huei Hsu, Chien-Tsai Liu |
| 2009 | Generating Peptide Sequence Tags for Peptide Identification via Tandem Mass Spectrometry. Changyong Yu, Guoren Wang, Yuhai Zhao, Keming Mao, Junjie Wu, Wendan Zhai |
| 2009 | Genetic Algorithm for the Design of Confronting Two-Pair Primers. Cheng-Hong Yang, Yu-Huei Cheng, Li-Yeh Chuang, Hsueh-Wei Chang |
| 2009 | Identifying Functional Modules Using MST-Based Weighted Gene Co-Expression Networks. Atthawut Chanthaphan, Santitham Prom-on, Asawin Meechai, Jonathan Hoyin Chan |
| 2009 | Image Analysis for High Content Screening with cellAnalyst. Jörg Meyer, Ash Pahwa, Peter Saveliev |
| 2009 | Immunomagnetical Reduction Using High Tc Superconducting Quantum Interference Device (SQUID). Jen-Jie Chieh, Chi-How Chen, Shieh-Yueh Yang, Herng-Er Horng, Chin-Yih Hong, Hong-Chang Yang |
| 2009 | Inferring Causal Relations from Multivariate Time Series: A Fast Method for Large-Scale Gene Expression Data. Yinyin Yuan, Chang-Tsun Li |
| 2009 | Integration of Heterogeneous Medical Decision Support Systems Based on Web Services. Chung C. Chang, Hsueh-Ming Lu |
| 2009 | Interaction Based Functional Clustering of Genomic Data. Ritesh Krishna, Chang-Tsun Li, Vicky Buchanan-Wollaston |
| 2009 | Knowledge Discovery on In Vitro Fertilization Clinical Data Using Particle Swarm Optimization. Chih-Chuan Chen, Chao-Chin Hsu, Yi-Chung Cheng, Sheng-Tun Li |
| 2009 | Learning Scaling Coefficient in Possibilistic Latent Variable Algorithm from Complex Diagnosis Data. Zong-Xian Yin |
| 2009 | Logistic Biclustering Models for Protein Network Inference. Carla Claudia da Rocha Rego Monteiro, Katia S. Guimarães |
| 2009 | Microarray Gene Expression Analysis Using Combinatorial Fusion. Cameron McMunn-Coffran, Christina Schweikert, D. Frank Hsu |
| 2009 | Mining Positional Association Super-Rules on Fixed-Size Protein Sequence Motifs. Bernard Chen, Sinan Kockara |
| 2009 | Multi-Agents System to Model Cell Signalling by Using Fuzzy Cognitive Maps. Application to Computer Simulation of Multiple Myeloma. Vincent Rodin, Gabriel Querrec, Pascal Ballet, François-Regis Bataille, Gireg Desmeulles, Jean François Abgrall, Jacques Tisseau |
| 2009 | Multi-Modal Registration of Embryonic Images for In Vitro Fertilization. Chia-Ling Tsai, Su-Ching Liang, William Warger, Charles DiMarzio |
| 2009 | Newborn Screening System Based on Adaptive Feature Selection and Support Vector Machines. Sung-Huai Hsieh, Yin-Hsiu Chien, Chia-Ping Shen, Wei-Hsin Chen, Po-Hao Chen, Sheau-Ling Hsieh, Po-Hsun Cheng, Feipei Lai |
| 2009 | Ninth IEEE International Conference on Bioinformatics and Bioengineering, BIBE 2009, June 22-24, 2009, Taichung, Taiwan Jeffrey J. P. Tsai, Phillip C.-Y. Sheu, Han C. W. Hsiao |
| 2009 | Nonlinear Dynamic Indications in Time Series of Epilepsy Electroencephalogram. Ta-Cheng Chen, Jiunn-I Shieh, Kuei-Jen Lee, Jing-Doo Wang, Pei-Chun Chang, Hsiang-Chuan Liu |
| 2009 | Normalizing Biomedical Name Entities by Similarity-Based Inference Network and De-ambiguity Mining. Chih-Hsuan Wei, I-Chin Huang, Yi-Yu Hsu, Hung-Yu Kao |
| 2009 | On the Design of Optimization Algorithms for Prediction of Molecular Interactions. Darby Tien-Hao Chang, Jung-Hsin Lin, Chih-Hung Hsieh, Yen-Jen Oyang |
| 2009 | On the Hardness of the Border Length Minimization Problem. Vamsi Kundeti, Sanguthevar Rajasekaran |
| 2009 | Online Discovery and Refinement of Novel Genes Using GeneScope. Hasan M. Jamil, J. Jesmin |
| 2009 | Phylogenetic Analysis Using Nuclear-Encoded Mitochondrial Proteins. Alan C. H. Chen, Han C. W. Hsiao, Jeffrey J. P. Tsai |
| 2009 | Profiling the Nanoparticles Associated Protein-protein Interactions. Wei-Chen Liao, Nai-Kuei Huang |
| 2009 | Quantitative Analysis of Endodontic Treatment for Periapical Lesions in Intraoral Radiographs. Taeju Lee, Hyekyung Jeong, Desok Kim, Byung-Do Lee |
| 2009 | RiboSW . Tzu-Hao Chang, Li-Ching Wu, Chi-Ta Yeh, Cheng-Wei Chang, Baw-Jhiune Liu, Hsien-Da Huang, Jorng-Tzong Horng |
| 2009 | SCDL Applications to Drug Discovery. David A. Hecht, Phillip C.-Y. Sheu, Jeffrey J. P. Tsai |
| 2009 | Segmentation of Brain MR Images Using an Ant Colony Optimization Algorithm. Myung-Eun Lee, Soo-Hyung Kim, Wan Hyun Cho, Soon-Young Park, Junsik Lim |
| 2009 | Simulation of Ultrasound Propagation in Cancellous Bone by Solving Elastic Wave Equation Using Finite Difference Time Domain Method. Nima Hemmati, Mohammad Djavad Abolhassani |
| 2009 | Soft Tissue Deformation and Optimized Data Structures for Mass Spring Methods. Tansel Halic, Sinan Kockara, Coskun Bayrak, Richard Rowe, Bernard Chen |
| 2009 | Spatial Encoding Scheme for Protein Supporting Structure Discovery. Yu-Feng Huang, Chia-Jui Yang, Yi-Wei Yang, Chien-Kang Huang |
| 2009 | The Energy Distribution Data Bank: Collecting Energy Features of Protein Molecular Structures. Dariusz Mrozek, Bozena Malysiak-Mrozek, Stanislaw Kozielski, Andrzej Swierniak |
| 2009 | The MAPK Signal Pathway Research and New Drug Discovery. Po-Yuan Chen, Mien-De Jhuo, Wei-Tse Hsu, Tzu-Ching Shih, Tzu-Hurng Cheng |
| 2009 | The Optimization of Monascus Fermentation Process for Pigments Increment and Citrinin Reduction. Chao-Chin Chung, Tzou-Chi Huang, Ho-Hsien Chen |
| 2009 | Tracking the Intracellular Dynamics of Transferrin-labeled QDs in Living Panc-1 Cells. Gaixia Xu, Junle Qu, Stefan Jäger, Qingfeng Song, Su-shing Chen |
| 2009 | Tri-Cluster-Tri-Scheme-Training: Exploiting Unlabeled Data for Transmembrane Segments Prediction. Jieyue He, Robert W. Harrison, Phang C. Tai, Yi Pan |
| 2009 | Vascular Tree Construction with Anatomical Realism for Retinal Images. Kai-Shung Lin, Chia-Ling Tsai, Michal Sofka, Chih-Hsiangng Tsai, Shih-Jen Chen, Wei-Yang Lin |
| 2009 | Web Services Based Bio-signal System Leveraging Support Vector Machines. Sung-Huai Hsieh, Sheau-Ling Hsieh, Chia-Ping Shen, Wei-Hsin Chen, Po-Hsun Cheng, Kai-Ping Hsu, Chi-Huang Chen, Feipei Lai |
| 2009 | Wedjat: A Mobile Phone Based Medicine In-take Reminder and Monitor. Mei-Ying Wang, Pei-Hsuan Tsai, Jane W.-S. Liu, John Kar-Kin Zao |