| 2007 | A Global Maximum Likelihood Super-Quartet Phylogeny Method. Pinghao Wang, Bing Bing Zhou, Monther Tarawneh, Daniel Chu, Chen Wang, Albert Y. Zomaya, Richard P. Brent |
| 2007 | A New Strategy of Geometrical Biclustering for Microarray Data Analysis. Hongya Zhao, Alan Wee-Chung Liew, Hong Yan |
| 2007 | A Novel Clustering Method for Analysis of Biological Networks using Maximal Components of Graphs. Morihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi |
| 2007 | A Probabilistic Method to Identify Compensatory Substitutions for Pathogenic Mutations. B. C. Easton, A. V. Isaev, Gavin A. Huttley, Peter Maxwell |
| 2007 | A Randomized Algorithm for Comparing Sets of Phylogenetic Trees. Seung-Jin Sul, Tiffani L. Williams |
| 2007 | Algorithm Engineering for Color-Coding to Facilitate Signaling Pathway Detection. Falk Hüffner, Sebastian Wernicke, Thomas Zichner |
| 2007 | Algorithmic Approaches to Selecting Control Clones in DNA Array Hybridization Experiments. Qi Fu, Elizabeth Bent, James Borneman, Marek Chrobak, Neal E. Young |
| 2007 | All Hits All The Time: Parameter Free Calculation of Seed Sensitivity. Denise Y. F. Mak, Gary Benson |
| 2007 | An Effective Promoter Detection Method using the Adaboost Algorithm. Xudong Xie, Shuanhu Wu, Kin-Man Lam, Hong Yan |
| 2007 | An Efficient Biclustering Algorithm for Finding Genes with Similar Patterns in Time-series Expression Data. Sara C. Madeira, Arlindo L. Oliveira |
| 2007 | Bugs, Guts and Fat - A Systems Approach to the Metabolic 'Axis of Evil'. Joseph H. Nadeau |
| 2007 | Combining N-grams and Alignment in G-protein Coupling Specificity Prediction. Betty Yee Man Cheng, Jaime G. Carbonell |
| 2007 | Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie |
| 2007 | Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees. Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stølting Brodal, Rolf Fagerberg |
| 2007 | Computing the Breakpoint Distance between Partially Ordered Genomes. Zheng Fu, Tao Jiang |
| 2007 | Computing the Quartet Distance Between Evolutionary Trees of Bounded Degree. Martin Stig Stissing, Christian N. S. Pedersen, Thomas Mailund, Gerth Stølting Brodal, Rolf Fagerberg |
| 2007 | De Novo Peptide Sequencing for Mass Spectra Based on Multi-Charge Strong Tags. Kang Ning, Ket Fah Chong, Hon Wai Leong |
| 2007 | Deriving Protein Structure Topology from the Helix Skeletion in Low Resolution Density Map using Rosetta. Yonggang Lu, Jing He, Charlie E. M. Strauss |
| 2007 | Exact and Heuristic Approaches for Identifying Disease-Associated SNP Motifs. Gaofeng Huang, Peter Jeavons, Dominic Kwiatkowski |
| 2007 | Exploring Genome Rearrangements using Virtual Hybridization. Mahdi Belcaid, Anne Bergeron, Annie Chateau, Cédric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette |
| 2007 | Exploring Genomes of Distantly Related Mammals. Jennifer A. Marshall Graves |
| 2007 | Fast Structural Similarity Search Based on Topology String Matching. Sung-Hee Park, David R. Gilbert, Keun Ho Ryu |
| 2007 | Fitting Protein Chains to Cubic Lattice is NP-Complete. Ján Manuch, Daya Ram Gaur |
| 2007 | Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions. Kinya Okada, Kiyoshi Asai, Masanori Arita |
| 2007 | Gene Regulatory Network Inference via Regression Based Topological Refinement. Jochen Supper, Holger Fröhlich, Andreas Zell |
| 2007 | Genotype-Based Case-Control Analysis, Violation of Hardy-Weinberg Equilibrium, and Phase Diagrams. Young Ju Suh, Wentian Li |
| 2007 | Inferring Gene Regulatory Networks by Machine Learning Methods. Jochen Supper, Holger Fröhlich, Christian Spieth, Andreas Dräger, Andreas Zell |
| 2007 | Inferring a Chemical Structure from a Feature Vector Based on Frequency of Labeled Paths and Small Fragments. Tatsuya Akutsu, Daiji Fukagawa |
| 2007 | Preface. David Sankoff, Lusheng Wang, Francis Y. L. Chin |
| 2007 | Proceedings of 5th Asia-Pacific Bioinformatics Conference, APBC 2007, 15-17 January 2007, Hong Kong, China David Sankoff, Lusheng Wang, Francis Y. L. Chin |
| 2007 | Protein Identification via Spectral Networks Analysis. Pavel A. Pevzner |
| 2007 | Protein Structure-Structure Alignment with Discrete Fr'echet Distance. Minghui Jiang, Ying Xu, Binhai Zhu |
| 2007 | Selecting Genes with Dissimilar Discrimination Strength for Sample Class Prediction. Zhipeng Cai, Randy Goebel, Mohammad R. Salavatipour, Yi Shi, Lizhe Xu, Guohui Lin |
| 2007 | Semi-supervised Pattern Learning for Extracting Relations from Bioscience Texts. Shilin Ding, Minlie Huang, Xiaoyan Zhu |
| 2007 | Simple and Fast Alignment of Metabolic Pathways by Exploiting Local Diversity. Sebastian Wernicke, Florian Rasche |
| 2007 | Subtle Motif Discovery for Detection of DNA Regulatory Sites. Matteo Comin, Laxmi Parida |
| 2007 | The Distance Between Randomly Constructed Genomes. Wei Xu |
| 2007 | Two Plus Two Does not Equal Three: Statistical Tests for Multiple Genome Comparison. Narayanan Raghupathy, Rose Hoberman, Dannie Durand |
| 2007 | Using Formal Concept Analysis for Microarray Data Comparison. V. Choi, Y. Huang, Vy Lam, D. Potter, Reinhard C. Laubenbacher, Karen Duca |
| 2007 | etagenome Analysis using Megan. Daniel H. Huson, Alexander F. Auch, Qi Ji, Stephan C. Schuster |