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| 2006 | A Knowledge-Based Approach to Protein Local Structure Prediction. Ching-Tai Chen, Hsin-Nan Lin, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu |
| 2006 | A More Accurate and Efficient Whole Genome Phylogeny. P. Y. Chan, Tak Wah Lam, Siu-Ming Yiu |
| 2006 | A New Neural Network for B-Turn Prediction: the Effect of Site-Specific Amino Acid Preference. Zhong-Ru Xie, Ming-Jing Hwang |
| 2006 | A Novel Approach for Structured Consensus Motif Inference Under Specificity and Quorum Constraints. Christine Sinoquet |
| 2006 | A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data. Christopher James Langmead |
| 2006 | A Recursive Method for Solving Haplotype Frequencies in Multiple Loci Linkage Analysis. Michael K. Ng |
| 2006 | Accuracy of Four Heuristics for the Full Sibship Reconstruction Problem in the Presence of Genotype Errors. Dmitry A. Konovalov |
| 2006 | AlignScope: A Visual Mining Tool for Gene Team Finding with Whole Genome Alignment. Hee-Jeong Jin, Hye-Jung Kim, Jeong-Hyeon Choi, Hwan-Gue Cho |
| 2006 | An Efficient Algorithm for String Motif Discovery. Francis Y. L. Chin, Henry C. M. Leung |
| 2006 | Analyzing Inconsistency Toward Enhancing Integration of Biological Molecular Databases. Yi-Ping Phoebe Chen, Qingfeng Chen |
| 2006 | Automating the Search for Lateral Gene Transfer. Mark A. Ragan |
| 2006 | Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner |
| 2006 | Characterization of the Existence of Galled-Tree Networks. Ján Manuch, Xiaohong Zhao, Ladislav Stacho, Arvind Gupta |
| 2006 | Consequences of Mutation, Selection, and Physico-Chemical Properties of Encoded Proteins on Synonymous Codon Usage in Adenoviruses. Sandip Paul, Sabyasachi Das, Chitra Dutta |
| 2006 | Discriminative Detection of Cis-Acting Regulatory Variation From Location Data. Yuji Kawada, Yasubumi Sakakibara |
| 2006 | Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. Marcos J. Araúzo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai |
| 2006 | EDAM: An Efficient Clique Discovery Algorithm with Frequency Transformation for Finding Motifs. Yifei Ma, Guoren Wang, Yongguang Li, Yuhai Zhao |
| 2006 | Gene Expression Data Clustering Based on Local Similarity Combination. De Pan, Fei Wang |
| 2006 | Genome Wide Computational Analysis of Small Nuclear RNA Genes for Oryza Sativa (Indica and Japonica). M. Shashikanth, A. Snethalatharani, S. K. Mubarak, K. Ulaganathan |
| 2006 | Identification of MicroRNA Precursors via SVM. Liang Huai Yang, Wynne Hsu, Mong-Li Lee, Limsoon Wong |
| 2006 | Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes. Shao-Shan Huang, Debra L. Fulton, David J. Arenillas, Paul Perco, Shannan J. Ho Sui, James R. Mortimer, Wyeth W. Wasserman |
| 2006 | Inference of Gene Regulatory Networks from Microarray Data: A Fuzzy Logic Approach. Patrick C. H. Ma, Keith C. C. Chan |
| 2006 | Microarray Missing Value Imputation by Iterated Local Least Squares. Zhipeng Cai, Maysam Heydari, Guohui Lin |
| 2006 | ONBRIRES: Ontology-Based Biological Relation Extraction System. Minlie Huang, Xiaoyan Zhu, Shilin Ding, Hao Yu, Ming Li |
| 2006 | On the Complexity of Finding Control Strategies for Boolean Networks. Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng |
| 2006 | On the Inference of Regulatory Elements, Circuits, and Modules. Wen-Hsiung Li |
| 2006 | Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices. Pin-Hao Chi, Chi-Ren Shyu |
| 2006 | Preface. Tao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong |
| 2006 | Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February 2006, Taipei, Taiwan Tao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong |
| 2006 | Property-Dependent Analysis of Aligned Proteins from Two Or More Populations. Steinar Thorvaldsen, Elinor Ytterstad, Tor Flå |
| 2006 | Protein Subcellular Localisation Prediction with WoLF PSORT. Paul Horton, Keun-Joon Park, Takeshi Obayashi, Kenta Nakai |
| 2006 | RECOMP: A Parsimony-Based Method for Detecting Recombination. Derek A. Ruths, Luay Nakhleh |
| 2006 | Resolving the Gene Tree and Species Tree Problem by Phylogenetic Mining. Xiaoxu Han |
| 2006 | Semi-Supervised Threshold Queries on Pharmacogenomics Time Sequences. Johannes Aßfalg, Hans-Peter Kriegel, Peer Kröger, Peter Kunath, Alexey Pryakhin, Matthias Renz |
| 2006 | Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression. K. Arun, Christopher James Langmead |
| 2006 | System Identification and Robustness Analysis of the Circadian Regulatory Network via Microarray Data in Arabidopsis Thaliana. C. W. Li, W. C. Chang, B. S. Chen |
| 2006 | Techniques for Assessing Phylogenetic Branch Support: A Performance Study. Derek A. Ruths, Luay Nakhleh |
| 2006 | Trends in Codon and Amino Acid Usage in Human Pathogen Tropheryma Whipplei, the only Known Actinobacteria with Reduced Genome. Sabyasachi Das, Sandip Paul, Chitra Dutta |
| 2006 | Whole Genome Optical Mapping. Michael S. Waterman |