| 2004 | A Brief Introduction to the Phylogentics Analysis Library V1.5. Matthew Goode, Korbinian Strimmer, Alexei J. Drummond, Ed Buckler, Allen G. Rodrigo |
| 2004 | A Combined Model and a Varied Gibbs Sampling Algorithm Used for Motif Discovery. Xiaoming Wu, Bo Wang, Changxin Song, Jingzhi Cheng |
| 2004 | A Dihedral Angle Database of Short Sub-sequences for Protein Structure Prediction. Saravanan Dayalan, Savitri Bevinakoppa, Heiko Schröder |
| 2004 | A Novel Feature Selection Method to Improve Classification of Gene Expression Data. Liang Goh, Qun Song, Nikola K. Kasabov |
| 2004 | A Novel Method for Protein Subcellular Localization Based on Boosting and Probabilistic Neural Network.. Jian Guo, Yuanlie Lin, Zhirong Sun |
| 2004 | A Pathway Editor for Literature-based Knowledge Curation. Ken-ichiro Fukuda, Toshihisa Takagi |
| 2004 | A Rapid Method of Whole Genome Visualisation Illustrating Features in Both Coding and Non-coding Regions. Ross Hall, Linda Stern |
| 2004 | Advanced Texturing Techniques for the Effective Visualization of Neoroanatomy from Diffusion Tensor Imaging Data. Burkhard Wünsche |
| 2004 | An Empirical Bayes Adjustment to Multiple p-values for the Detection of Differentially Expressed Genes in Microarray Experiments. Somnath Datta, Susmita Datta |
| 2004 | BRINet: A BioResource Integration Network. Jason E. Sew Hoy, Alan F. McCulloch, John R. McDonald |
| 2004 | Classification Comparison of Prediction of Solvent Accessibility From Protein Sequences. Huiling Chen, Huan-Xiang Zhou, Xiaohua Hu, Illhoi Yoo |
| 2004 | Cluster Ensemble and Its Applications in Gene Expression Analysis. Xiaohua Hu, Illhoi Yoo |
| 2004 | Constructing Genome Scale Suffix Trees. A. L. Brown |
| 2004 | Detecting Local Symmetry Axis in 3-dimensional Virus Structures. Jing He, Desh Ranjan, Wen Jiang, Wah Chiu, Michael F. Schmid |
| 2004 | Dispensation Order Generation for Pyrosequencing. Mats Carlsson, Nicolas Beldiceanu |
| 2004 | EMAGEN: An Efficient Approach to Multiple Whole Genome Alignment. Jitender S. Deogun, Jingyi Yang, Fangrui Ma |
| 2004 | Empirical Knowledge and Genetic Algorithms for Selection of Amide I Frequencies in Protein Secondary Structure Prediction. Joachim A. Hering, Peter R. Innocent, Parvez I. Haris |
| 2004 | Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1. Peter L. Meintjes, Allen G. Rodrigo |
| 2004 | Evolving Genetic Regulatory Networks Using an Artificial Genome. Jennifer Hallinan, Janet Wiles |
| 2004 | Exact Pattern Matching for RNA Secondary Structures. Ying Yu, Lusheng Wang, Xiaotie Deng |
| 2004 | Filtering of Ineffective siRNAs and Improved siRNA Design Tool. Prudence W. H. Wong, Tak Wah Lam, Y. C. Mui, Siu-Ming Yiu, Hsiang-fu Kung, Marie C. M. Lin, Y. T. Cheung |
| 2004 | Identifying Character Non-Independence in Phylogenetic Data Using Data Mining Techniques. Anne M. Maglia, Jennifer L. Leopold, Venkat Ram Ghatti |
| 2004 | Informative 3D Visualization of Multiple Protein Structures. Paulo Lai, Warren Kaplan, W. Bret Church, Raymond K. Wong |
| 2004 | Initial SARS Genome Data Analysis Using a Bioinformatics Platform. Hong Luo, Jingchu Luo |
| 2004 | Integrating Biopathway Databases for Large-scale Modeling and Simulation. Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Satoru Miyano |
| 2004 | Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA Sequences. Tun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu, Wei-Yuan Chang, Hsiu Ling Tai |
| 2004 | Local Prediction Approach of Protein Classification using Probabilistic Suffix Trees. Zhaohui Sun, Jitender S. Deogun |
| 2004 | Measuring Correlation between Microarray Time-series Data using Dominant Spectrum Component. Lap Kun Yeung, Hong Yan, Alan Wee-Chung Liew, Lap Keung Szeto, Michael Yang, Richard Kong |
| 2004 | Mega Weaver: A Simple Iterative Approach for BAC Consensus Assembly. Daolong Wang, Mario Lauria, Bo Yuan, Fred A. Wright |
| 2004 | Molecular Imaging and Biomedical Process Modeling. David Dagan Feng |
| 2004 | Multiple Sequence Alignment Using Tabu Search. Tariq Riaz, Yi Wang, Kuo-Bin Li |
| 2004 | Nonparametric Approaches to Detecting Differentially Expressed Genes in Replicated Microarray Experiments. Markus Neuhäuser, Fred C. Lam |
| 2004 | On the Simultaneous Use of Clinical and Microarray Expression Data in the Cluster Analysis of Tissue Samples. Geoffrey J. McLachlan, Soong Chang, Jess Mar, Christophe Ambroise, Justin Xi Zhu |
| 2004 | PathwayFinder: Paving the Way Towards Automatic Pathway Extraction. Daming Yao, Jingbo Wang, Yanmei Lu, Nathan Noble, Huandong Sun, Xiaoyan Zhu, Nan Lin, Donald G. Payan, Ming Li, Kunbin Qu |
| 2004 | Phylogenetic Tree of Prokaryotes Based on the Complete Genomes using Fractal and Correlation Analyses. Zu-Guo Yu, Vo Anh |
| 2004 | Phylogenetic Trees: An Information Visualisation Perspective. Savrina F. Carrizo |
| 2004 | Protein Side-chain Packing Problem: A Maximum Edge-weight Clique Algorithmic Approach. Dukka Bahadur, Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki |
| 2004 | RNA Secondary Structure Prediction with Simple Pseudoknots. Jitender S. Deogun, Ruben Donts, Olga Komina, Fangrui Ma |
| 2004 | Recognition Sequences in the Restriction Endonucleases. Jan C. Biro, Josephine M. K. Biro |
| 2004 | Representing Experimental Biological Data in Metabolic Networks. Tim Dwyer, Hardy Rolletschek, Falk Schreiber |
| 2004 | Second Asia-Pacific Bioinformatics Conference (APBC 2004), January 18-22, 2004, Dunedin, New Zealand Yi-Ping Phoebe Chen |
| 2004 | Structure-Function Relationship in DNA Sequence Recognition by Transcription Factors. Akinori Sarai, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono |
| 2004 | Support Vector Machine Approach for Cancer Detection Using Amplified Fragment Length Polymorphism (AFLP) Screening Method.. Waiming Kong, Lawrence Tham, Kee Yew Wong, Patrick Tan |
| 2004 | THEMATICS is Effective for Active Site Prediction in Comparative Model Structures. Ihsan A. Shehadi, Alper Uzun, Leonel F. Murga, Valentin A. Ilyin, Mary Jo Ondrechen |
| 2004 | The Future of Bioinformatics. Philip E. Bourne |
| 2004 | Towards a Theory of Protein Adsorption: Predicting the Adsorption of Proteins on Surfaces via a Piecewise Linear Model. Dan V. Nicolau Jr., Dan V. Nicolau |
| 2004 | Transmembrane Region Prediction with Hydropathy Index/Charge Two-Dimensional Trajectories of Stochastic Dynamical Systems. Takashi Kaburagi, Daigo Muramatsu, Sho Hashimoto, Masahiro Sasaki, Takashi Matsumoto |
| 2004 | Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data.. Jinyan Li, Huiqing Liu, Limsoon Wong |
| 2004 | Using Emerging Pattern Based Projected Clustering and Gene Expression Data for Cancer Detection. Larry T. H. Yu, Fu-Lai Chung, Stephen Chi-fai Chan, Simon M. C. Yuen |
| 2004 | Variable-length Intervals in Homology Search. Abhijit Chattaraj, Hugh E. Williams |
| 2004 | Whole-Genome Functional Classification of Genes by Latent Semantic Analysis on Microarray Data. See-Kiong Ng, Zexuan Zhu, Yew-Soon Ong |