Öznur Tastan

36 papers Misc 2Journal 29Unranked 5
YearRankTypeTitle / Venue / Authors
2026 J jnl
One-hot news: drug synergy models shortcut molecular features.
Bioinform.
Emine Beyza Çandir, Halil Ibrahim Kuru, Magnus Rattray, A. Ercüment Çiçek, Öznur Tastan
2025 J jnl
DARKIN: a zero-shot benchmark for phosphosite-dark kinase association using protein language models.
Bioinform.
Emine Ayse Sunar, Zeynep Isik, Mert Pekey, Ramazan Gökberk Cinbis, Öznur Tastan
2024 J jnl
Focusing on potential named entities during active label acquisition.
Nat. Lang. Eng.
Ali Osman Berk Sapci, Hasan Kemik, Reyyan Yeniterzi, Öznur Tastan
2024 J jnl
From cell lines to cancer patients: personalized drug synergy prediction.
Bioinform.
Halil Ibrahim Kuru, A. Ercüment Çiçek, Öznur Tastan
2023 J jnl
DeepSide: A Deep Learning Approach for Drug Side Effect Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Onur Can Uner, Halil Ibrahim Kuru, Ramazan Gokberk Cinbis, Öznur Tastan, A. Ercüment Çiçek
2023 J jnl
Discovering misannotated lncRNAs using deep learning training dynamics.
Bioinform.
Afshan Nabi, Berke Dilekoglu, Ogun Adebali, Öznur Tastan
2023 J jnl
MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing.
Bioinform.
Ali Osman Berk Sapci, Shan Lu, Shuchen Yan, Ferhat Ay, Öznur Tastan, Sündüz Keles
2022 J jnl
MatchMaker: A Deep Learning Framework for Drug Synergy Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform.
Halil Ibrahim Kuru, Öznur Tastan, A. Ercüment Çiçek
2022 J jnl
Uncovering complementary sets of variants for predicting quantitative phenotypes.
Bioinform.
Serhan Yilmaz, Mohamad Fakhouri, Mehmet Koyutürk, A. Ercüment Çiçek, Öznur Tastan
2022 J jnl
miRCoop: Identifying Cooperating miRNAs via Kernel Based Interaction Tests.
IEEE ACM Trans. Comput. Biol. Bioinform.
Gulden Olgun, Öznur Tastan
2021 J jnl
A Tool for Detecting Complementary Single Nucleotide Polymorphism Pairs in Genome-Wide Association Studies for Epistasis Testing.
J. Comput. Biol.
Gizem Caylak, Öznur Tastan, A. Ercüment Çiçek
2021 J jnl
Correction to: NoRCE: non‑coding RNA sets cis enrichment tool.
BMC Bioinform.
Gulden Olgun, Afshan Nabi, Öznur Tastan
2021 J jnl
Focusing on Possible Named Entities in Active Named Entity Label Acquisition.
CoRR
Ali Osman Berk Sapci, Öznur Tastan, Reyyan Yeniterzi
2021 J jnl
ML with HE: Privacy Preserving Machine Learning Inferences for Genome Studies.
CoRR
Seyma Selcan Magara, Ceren Yildirim, Ferhat Yaman, Berke Dilekoglu, Furkan Reha Tutas, Erdinç Öztürk, Kamer Kaya, Öznur Tastan, Erkay Savas
2021 J jnl
Near-Optimal Privacy-Utility Tradeoff in Genomic Studies Using Selective SNP Hiding.
CoRR
Nour Almadhoun Alserr, Gulce Kale, Onur Mutlu, Öznur Tastan, Erman Ayday
2021 J jnl
NoRCE: non-coding RNA sets cis enrichment tool.
BMC Bioinform.
Gulden Olgun, Afshan Nabi, Öznur Tastan
2021 J jnl
PAMOGK: a pathway graph kernel-based multiomics approach for patient clustering.
Bioinform.
Yasin Ilkagan Tepeli, Ali Burak Ünal, Furkan Mustafa Akdemir, Öznur Tastan
2021 J jnl
PRER: A patient representation with pairwise relative expression of proteins on biological networks.
PLoS Comput. Biol.
Halil Ibrahim Kuru, Mustafa Buyukozkan, Öznur Tastan
2021 J jnl
Potpourri: An Epistasis Test Prioritization Algorithm via Diverse SNP Selection.
J. Comput. Biol.
Gizem Caylak, Öznur Tastan, A. Ercüment Çiçek
2021 J jnl
SPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWAS.
IEEE ACM Trans. Comput. Biol. Bioinform.
Serhan Yilmaz, Öznur Tastan, A. Ercüment Çiçek
2020 — conf
Active Learning for Turkish Text Classification.
SIU
Ali Osman Berk Sapci, Öznur Tastan, Reyyan Yeniterzi
2020 J jnl
DeepKinZero: zero-shot learning for predicting kinase-phosphosite associations involving understudied kinases.
Bioinform.
Iman Deznabi, Busra Arabaci, Mehmet Koyutürk, Öznur Tastan
2020 — conf
Functional Enrichment Analysis of Deregulated Long Non-Coding RNAs in Cancer Based on their Genomic Neighbors.
BCB
Gulden Olgun, Öznur Tastan
2018 J jnl
A utility maximizing and privacy preserving approach for protecting kinship in genomic databases.
Bioinform.
Gulce Kale, Erman Ayday, Öznur Tastan
2018 J jnl
Active Learning Methods based on Statistical Leverage Scores.
CoRR
Cem Orhan, Öznur Tastan
2018 J jnl
An Inference Attack on Genomic Data Using Kinship, Complex Correlations, and Phenotype Information.
IEEE ACM Trans. Comput. Biol. Bioinform.
Iman Deznabi, Mohammad Mobayen, Nazanin Jafari, Öznur Tastan, Erman Ayday
2017 J jnl
GLANET: genomic loci annotation and enrichment tool.
Bioinform.
Burçak Otlu, Can Firtina, Sündüz Keles, Öznur Tastan
2016 J jnl
Identification of Cancer Patient Subgroups via Smoothed Shortest Path Graph Kernel.
CoRR
Ali Burak Ünal, Öznur Tastan
2015 J jnl
ALEVS: Active Learning by Statistical Leverage Sampling.
CoRR
Cem Orhan, Öznur Tastan
2015 Misc conf
Refining Literature Curated Protein Interactions Using Expert Opinions.
Pacific Symposium on Biocomputing
Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman
2011 J jnl
Virus interactions with human signal transduction pathways.
Int. J. Comput. Biol. Drug Des.
Zhongming Zhao, Junfeng Xia, Öznur Tastan, Irtisha Singh, Meghana Kshirsagar, Jaime G. Carbonell, Judith Klein-Seetharaman
2010 — conf
Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments.
SoSE
Subhodeep Moitra, Naveena Yanamala, Öznur Tastan, Irtisha Singh, Christopher James Langmead, Judith Klein-Seetharaman
2010 — conf
Comparison of virus interactions with human signal transduction pathways.
BCB
Irtisha Singh, Öznur Tastan, Judith Klein-Seetharaman
2010 J jnl
Semi-supervised multi-task learning for predicting interactions between HIV-1 and human proteins.
Bioinform.
Yanjun Qi, Öznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman, Jason Weston
2009 — conf
Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1.
GENSiPS
Sivaraman Balakrishnan, Öznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman
2009 Misc conf
Prediction of Interactions Between HIV-1 and Human Proteins by Information Integration.
Pacific Symposium on Biocomputing
Öznur Tastan, Yanjun Qi, Jaime G. Carbonell, Judith Klein-Seetharaman