Özlem Uzuner - RankMe

181 papers A* 1A 1B 1C 2Misc 18Journal 109Unranked 48

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Contradiction to Consensus: Dual Perspective, Multi Source Retrieval Based Claim Verification with Source Level Disagreement using LLM. CoRR Md Badsha Biswas, Özlem Uzuner
2025	J	`jnl`	A Scoping Review of Natural Language Processing in Addressing Medically Inaccurate Information: Errors, Misinformation, and Hallucination. CoRR Zhaoyi Sun, Wen-Wai Yim, Özlem Uzuner, Fei Xia, Meliha Yetisgen
2025	J	`jnl`	A Systematic Analysis of Large Language Models with RAG-enabled Dynamic Prompting for Medical Error Detection and Correction. CoRR Farzad Ahmed, Joniel Augustine Jerome, Meliha Yetisgen, Özlem Uzuner
2025	J	`jnl`	A scoping review of natural language processing in addressing medically inaccurate information: Errors, misinformation, and hallucination. J. Biomed. Informatics Zhaoyi Sun, Wen-Wai Yim, Özlem Uzuner, Fei Xia, Meliha Yetisgen
2025	J	`jnl`	Adapting Biomedical Abstracts into Plain language using Large Language Models. CoRR Haritha Gangavarapu, Giridhar Kaushik Ramachandran, Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2025	J	`jnl`	Assessing Large Language Models for Structured Medical Order Extraction. CoRR A. H. M. Rezaul Karim, Özlem Uzuner
2025	J	`jnl`	Automated Identification of Incidentalomas Requiring Follow-Up: A Multi-Anatomy Evaluation of LLM-Based and Supervised Approaches. CoRR Namu Park, Farzad Ahmed, Zhaoyi Sun, Kevin Lybarger, Ethan Breinhorst, Julie Hu, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
2025	—	`conf`	Does Data Contamination Detection Work (Well) for LLMs? A Survey and Evaluation on Detection Assumptions. NAACL (Findings) Yujuan Fu, Özlem Uzuner, Meliha Yetisgen, Fei Xia
2025	J	`jnl`	Identifying Imaging Follow-Up in Radiology Reports: A Comparative Analysis of Traditional ML and LLM Approaches. CoRR Namu Park, Giridhar Kaushik Ramachandran, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen, Martin L. Gunn
2025	—	`conf`	Leveraging Machine-Generated Data for Joint Intent Detection and Slot Filling in Bangla: A Resource-Efficient Approach. COLING Workshops A. H. M. Rezaul Karim, Özlem Uzuner
2025	J	`jnl`	Multimodal Retrieval-Augmented Generation with Large Language Models for Medical VQA. CoRR A. H. M. Rezaul Karim, Özlem Uzuner
2025	J	`jnl`	Prompting Large Language Models to Detect Dementia Family Caregivers. CoRR Md Badsha Biswas, Özlem Uzuner
2025	—	`conf`	Spurious Correlations and Beyond: Understanding and Mitigating Shortcut Learning in SDOH Extraction with Large Language Models. ACL (2) Fardin Ahsan Sakib, Ziwei Zhu, Karen Trister Grace, Meliha Yetisgen, Özlem Uzuner
2025	J	`jnl`	Spurious Correlations and Beyond: Understanding and Mitigating Shortcut Learning in SDOH Extraction with Large Language Models. CoRR Fardin Ahsan Sakib, Ziwei Zhu, Karen Trister Grace, Meliha Yetisgen, Özlem Uzuner
2024	—	`conf`	A Novel Corpus of Annotated Medical Imaging Reports and Information Extraction Results Using BERT-based Language Models. LREC/COLING Namu Park, Kevin Lybarger, Giridhar Kaushik Ramachandran, Spencer Lewis, Aashka Damani, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
2024	J	`jnl`	A Novel Corpus of Annotated Medical Imaging Reports and Information Extraction Results Using BERT-based Language Models. CoRR Namu Park, Kevin Lybarger, Giridhar Kaushik Ramachandran, Spencer Lewis, Aashka Damani, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
2024	J	`jnl`	BioMistral-NLU: Towards More Generalizable Medical Language Understanding through Instruction Tuning. CoRR Yujuan Fu, Giridhar Kaushik Ramachandran, Namu Park, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen
2024	J	`jnl`	CACER: Clinical Concept Annotations for Cancer Events and Relations. CoRR Yujuan Fu, Giridhar Kaushik Ramachandran, Ahmad Halwani, Bridget T. McInnes, Fei Xia, Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2024	J	`jnl`	CACER: Clinical concept Annotations for Cancer Events and Relations. J. Am. Medical Informatics Assoc. Yujuan Fu, Giridhar Kaushik Ramachandran, Ahmad Halwani, Bridget T. McInnes, Fei Xia, Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2024	J	`jnl`	Clinical natural language processing for secondary uses. J. Biomed. Informatics Yanjun Gao, Diwakar Mahajan, Özlem Uzuner, Meliha Yetisgen
2024	J	`jnl`	Collaborative Design for Job-Seekers with Autism: A Conceptual Framework for Future Research. CoRR Sungsoo Ray Hong, Marcos Zampieri, Brittany N. Hand, Vivian Motti, Dongjun Chung, Özlem Uzuner
2024	J	`jnl`	Does Data Contamination Detection Work (Well) for LLMs? A Survey and Evaluation on Detection Assumptions. CoRR Yujuan Fu, Özlem Uzuner, Meliha Yetisgen, Fei Xia
2024	—	`conf`	Extracting Social Determinants of Health from Pediatric Patient Notes Using Large Language Models: Novel Corpus and Methods. LREC/COLING Yujuan Fu, Giridhar Kaushik Ramachandran, Nicholas J. Dobbins, Namu Park, Michael Leu, Abby R. Rosenberg, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen
2024	J	`jnl`	Extracting Social Determinants of Health from Pediatric Patient Notes Using Large Language Models: Novel Corpus and Methods. CoRR Yujuan Fu, Giridhar Kaushik Ramachandran, Nicholas J. Dobbins, Namu Park, Michael Leu, Abby R. Rosenberg, Kevin Lybarger, Fei Xia, Özlem Uzuner, Meliha Yetisgen
2024	J	`jnl`	Large language models for biomedicine: foundations, opportunities, challenges, and best practices. J. Am. Medical Informatics Assoc. Satya S. Sahoo, Joseph M. Plasek, Hua Xu, Özlem Uzuner, Trevor Cohen, Meliha Yetisgen, Hongfang Liu, Stéphane M. Meystre, Yanshan Wang
2024	—	`conf`	MasonTigers at SemEval-2024 Task 8: Performance Analysis of Transformer-based Models on Machine-Generated Text Detection. SemEval@NAACL Sadiya Sayara Chowdhury Puspo, Md. Nishat Raihan, Dhiman Goswami, Al Nahian Bin Emran, Amrita Ganguly, Özlem Uzuner
2024	J	`jnl`	MasonTigers at SemEval-2024 Task 8: Performance Analysis of Transformer-based Models on Machine-Generated Text Detection. CoRR Sadiya Sayara Chowdhury Puspo, Md. Nishat Raihan, Dhiman Goswami, Al Nahian Bin Emran, Amrita Ganguly, Özlem Uzuner
2023	J	`jnl`	Advancements in extracting social determinants of health information from narrative text. J. Am. Medical Informatics Assoc. Kevin Lybarger, Oliver J. Bear Don't Walk IV, Meliha Yetisgen, Özlem Uzuner
2023	J	`jnl`	Extracting medication changes in clinical narratives using pre-trained language models. J. Biomed. Informatics Giridhar Kaushik Ramachandran, Kevin Lybarger, Yaya Liu, Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Meliha Yetisgen, Özlem Uzuner
2023	J	`jnl`	LeafAI: query generator for clinical cohort discovery rivaling a human programmer. CoRR Nicholas J. Dobbins, Bin Han, Weipeng Zhou, Kristine Lan, H. Nina Kim, Robert D. Harrington, Özlem Uzuner, Meliha Yetisgen
2023	J	`jnl`	LeafAI: query generator for clinical cohort discovery rivaling a human programmer. J. Am. Medical Informatics Assoc. Nicholas J. Dobbins, Bin Han, Weipeng Zhou, Kristine Lan, H. Nina Kim, Robert D. Harrington, Özlem Uzuner, Meliha Yetisgen
2023	J	`jnl`	Leveraging natural language processing to augment structured social determinants of health data in the electronic health record. J. Am. Medical Informatics Assoc. Kevin Lybarger, Nicholas J. Dobbins, Ritche Long, Angad P. Singh, Patrick Wedgeworth, Özlem Uzuner, Meliha Yetisgen
2023	—	`conf`	MASON-NLP at eRisk 2023: Deep Learning-Based Detection of Depression Symptoms from Social Media Texts. CLEF (Working Notes) Fardin Ahsan Sakib, Ahnaf Atef Choudhury, Özlem Uzuner
2023	J	`jnl`	MASON-NLP at eRisk 2023: Deep Learning-Based Detection of Depression Symptoms from Social Media Texts. CoRR Fardin Ahsan Sakib, Ahnaf Atef Choudhury, Özlem Uzuner
2023	—	`conf`	MasonNLP+ at SemEval-2023 Task 8: Extracting Medical Questions, Experiences and Claims from Social Media using Knowledge-Augmented Pre-trained Language Models. SemEval@ACL Giridhar Kaushik Ramachandran, Haritha Gangavarapu, Kevin Lybarger, Özlem Uzuner
2023	J	`jnl`	MasonNLP+ at SemEval-2023 Task 8: Extracting Medical Questions, Experiences and Claims from Social Media using Knowledge-Augmented Pre-trained Language Models. CoRR Giridhar Kaushik Ramachandran, Haritha Gangavarapu, Kevin Lybarger, Özlem Uzuner
2023	J	`jnl`	Overview of the 2022 n2c2 shared task on contextualized medication event extraction in clinical notes. J. Biomed. Informatics Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Özlem Uzuner
2023	J	`jnl`	Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 Shared Task. CoRR Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar
2023	J	`jnl`	Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 shared task. J. Biomed. Informatics Yanjun Gao, Dmitriy Dligach, Timothy Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar
2023	—	`conf`	Prompt-based Extraction of Social Determinants of Health Using Few-shot Learning. ClinicalNLP@ACL Giridhar Kaushik Ramachandran, Yujuan Fu, Bin Han, Kevin Lybarger, Nicholas J. Dobbins, Özlem Uzuner, Meliha Yetisgen
2023	J	`jnl`	Prompt-based Extraction of Social Determinants of Health Using Few-shot Learning. CoRR Giridhar Kaushik Ramachandran, Yujuan Fu, Bin Han, Kevin Lybarger, Nicholas J. Dobbins, Özlem Uzuner, Meliha Yetisgen
2023	J	`jnl`	The 2022 n2c2/UW Shared Task on Extracting Social Determinants of Health. CoRR Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2023	J	`jnl`	The 2022 n2c2/UW shared task on extracting social determinants of health. J. Am. Medical Informatics Assoc. Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
2022	J	`jnl`	A Context-Enhanced De-identification System. ACM Trans. Comput. Heal. Kahyun Lee, Mehmet Kayaalp, Sam Henry, Özlem Uzuner
2022	Misc	`conf`	A Corpus of Radiology Reports From Multiple Imaging Modalities With Fine-grained Event-based Annotations. AMIA Kevin Lybarger, Namu Park, Sitong Zhou, Aashka Damani, Alison Brennan, Jagjeet Gill, Nianiella Dorvall, Vy Huynh, Spencer Lewis, Martin L. Gunn, Özlem Uzuner, Meliha Yetisgen
2022	J	`jnl`	A scoping review of publicly available language tasks in clinical natural language processing. J. Am. Medical Informatics Assoc. Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar
2022	J	`jnl`	Call for papers: Special issue on clinical natural language processing for secondary use applications. J. Biomed. Informatics Meliha Yetisgen, Özlem Uzuner, Yanjun Gao, Diwakar Mahajan
2022	J	`jnl`	Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers. Database J. Biol. Databases Curation Graciela Gonzalez-Hernandez, Martin Krallinger, Monica A. Muñoz, Raul Rodriguez-Esteban, Özlem Uzuner, Lynette Hirschman
2022	J	`jnl`	Extracting Medication Changes in Clinical Narratives using Pre-trained Language Models. CoRR Giridhar Kaushik Ramachandran, Kevin Lybarger, Yaya Liu, Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Meliha Yetisgen, Özlem Uzuner
2022	J	`jnl`	Fine-Tuning Approach for Arabic Offensive Language Detection System: BERT-Based Model. CoRR Fatemah Husain, Özlem Uzuner
2022	J	`jnl`	Investigating the Effect of Preprocessing Arabic Text on Offensive Language and Hate Speech Detection. ACM Trans. Asian Low Resour. Lang. Inf. Process. Fatemah Husain, Özlem Uzuner
2022	J	`jnl`	Online User Profiling to Detect Social Bots on Twitter. CoRR Maryam Heidari, James H. Jones Jr., Özlem Uzuner
2022	J	`jnl`	The Leaf Clinical Trials Corpus: a new resource for query generation from clinical trial eligibility criteria. CoRR Nicholas J. Dobbins, Tony Mullen, Özlem Uzuner, Meliha Yetisgen
2022	—	`conf`	Transfer Learning Across Arabic Dialects for Offensive Language Detection. IALP Fatemah Husain, Özlem Uzuner
2021	J	`jnl`	A Context-Enhanced De-identification System. CoRR Kahyun Lee, Mehmet Kayaalp, Sam Henry, Özlem Uzuner
2021	Misc	`conf`	A New Corpus for Clinical Findings in Radiology Reports. AMIA Wilson Lau, David Wayne, Spencer Lewis, Özlem Uzuner, Martin L. Gunn, Meliha Yetisgen
2021	J	`jnl`	A Scoping Review of Publicly Available Language Tasks in Clinical Natural Language Processing. CoRR Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar
2021	J	`jnl`	A Survey of Offensive Language Detection for the Arabic Language. ACM Trans. Asian Low Resour. Lang. Inf. Process. Fatemah Husain, Özlem Uzuner
2021	—	`conf`	A Survey on Concept-Level Sentiment Analysis Techniques of Textual Data. AIIoT Samira Zad, Maryam Heidari, James H. Jones, Özlem Uzuner
2021	—	`conf`	BERT Model for Fake News Detection Based on Social Bot Activities in the COVID-19 Pandemic. UEMCON Maryam Heidari, Samira Zad, Parisa Hajibabaee, Masoud Malekzadeh, SeyyedPooya HekmatiAthar, Özlem Uzuner, James H. Jones
2021	J	`jnl`	Corrigendum to: The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. J. Am. Medical Informatics Assoc. Sam Henry, Yanshan Wang, Feichen Shen, Özlem Uzuner
2021	—	`conf`	Detecting Scarce Emotions Using BERT and Hyperparameter Optimization. ICANN (5) Zahra Rajabi, Özlem Uzuner, Amarda Shehu
2021	—	`conf`	Emotion Detection of Textual Data: An Interdisciplinary Survey. AIIoT Samira Zad, Maryam Heidari, James H. Jones Jr., Özlem Uzuner
2021	—	`conf`	Evaluating the Relevance of UMLS Knowledge Base for Public Health Informatics during Disasters. ISCRAM Yasas Senarath, Jennifer L. Chan, Hemant Purohit, Özlem Uzuner
2021	J	`jnl`	Exploratory Arabic Offensive Language Dataset Analysis. CoRR Fatemah Husain, Özlem Uzuner
2021	J	`jnl`	Extracting Radiological Findings With Normalized Anatomical Information Using a Span-Based BERT Relation Extraction Model. CoRR Kevin Lybarger, Aashka Damani, Martin L. Gunn, Özlem Uzuner, Meliha Yetisgen
2021	J	`jnl`	Fake Document Generation for Cyber Deception by Manipulating Text Comprehensibility. IEEE Syst. J. Prakruthi Karuna, Hemant Purohit, Sushil Jajodia, Rajesh Ganesan, Özlem Uzuner
2021	J	`jnl`	Jointly Learning Clinical Entities and Relations with Contextual Language Models and Explicit Context. CoRR Paul Barry, Sam Henry, Meliha Yetisgen, Bridget T. McInnes, Özlem Uzuner
2021	—	`conf`	Leveraging Offensive Language for Sarcasm and Sentiment Detection in Arabic. WANLP Fatemah Husain, Özlem Uzuner
2021	—	`conf`	MNLP at MEDIQA 2021: Fine-Tuning PEGASUS for Consumer Health Question Summarization. BioNLP@NAACL-HLT Jooyeon Lee, Huong Dang, Özlem Uzuner, Sam Henry
2021	J	`jnl`	MT-clinical BERT: scaling clinical information extraction with multitask learning. J. Am. Medical Informatics Assoc. Andriy Mulyar, Özlem Uzuner, Bridget T. McInnes
2021	J	`jnl`	Performance of Automatic De-identification Across Different Note Types. CoRR Nicholas J. Dobbins, David Wayne, Kahyun Lee, Özlem Uzuner, Meliha Yetisgen
2021	—	`conf`	Review of Graph Neural Network in Text Classification. UEMCON Masoud Malekzadeh, Parisa Hajibabaee, Maryam Heidari, Samira Zad, Özlem Uzuner, James H. Jones
2021	A	`conf`	Scalable Graph Synthesis with Adj and 1 - Adj. SDM Jinsung Jeon, Jing Liu, Jayoung Kim, Jaehoon Lee, Noseong Park, Jamie Jooyeon Lee, Özlem Uzuner, Sushil Jajodia
2021	—	`conf`	SemEval-2021 Task 10: Source-Free Domain Adaptation for Semantic Processing. SemEval@ACL/IJCNLP Egoitz Laparra, Xin Su, Yiyun Zhao, Özlem Uzuner, Timothy A. Miller, Steven Bethard
2021	J	`jnl`	Transfer Learning Approach for Arabic Offensive Language Detection System - BERT-Based Model. CoRR Fatemah Husain, Özlem Uzuner
2021	J	`jnl`	Transferability of Neural Network-based De-identification Systems. CoRR Kahyun Lee, Nicholas J. Dobbins, Bridget T. McInnes, Meliha Yetisgen, Özlem Uzuner
2021	J	`jnl`	Transferability of neural network clinical deidentification systems. J. Am. Medical Informatics Assoc. Kahyun Lee, Nicholas J. Dobbins, Bridget T. McInnes, Meliha Yetisgen, Özlem Uzuner
2020	J	`jnl`	2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records. J. Am. Medical Informatics Assoc. Sam Henry, Kevin Buchan, Michele Filannino, Amber Stubbs, Özlem Uzuner
2020	—	`conf`	A Multi-channel BiLSTM-CNN Model for Multilabel Emotion Classification of Informal Text. ICSC Zahra Rajabi, Amarda Shehu, Özlem Uzuner
2020	Misc	`conf`	A Novel Corpus With Detailed Annotations of Social Determinants of Health. AMIA Kevin Lybarger, Elizabeth Chang, Kylie Kerker, Jolie Shen, Erica Qiao, Özlem Uzuner, Mari Ostendorf, Meliha Yetisgen
2020	J	`jnl`	Advancing the state of the art in automatic extraction of adverse drug events from narratives. J. Am. Medical Informatics Assoc. Özlem Uzuner, Amber Stubbs, Leslie Lenert
2020	J	`jnl`	Adverse drug event detection using reason assignments in FDA drug labels. J. Biomed. Informatics Corey Sutphin, Kahyun Lee, Antonio Jimeno-Yepes, Özlem Uzuner, Bridget T. McInnes
2020	—	`conf`	Deep Contextualized Word Embedding for Text-based Online User Profiling to Detect Social Bots on Twitter. ICDM (Workshops) Maryam Heidari, James H. Jones, Özlem Uzuner
2020	J	`jnl`	Emerging clinical applications of text analytics. Int. J. Medical Informatics Irena Spasic, Özlem Uzuner, Li Zhou
2020	—	`conf`	Ensemble BERT for Classifying Medication-mentioning Tweets. SMM4H@COLING Huong Dang, Kahyun Lee, Sam Henry, Özlem Uzuner
2020	Misc	`conf`	Jointly Learning Clinical Entities and Relations with Contextual Language Models and Explicit Context. AMIA Paul Barry, Sam Henry, Meliha Yetisgen, Bridget T. McInnes, Özlem Uzuner
2020	Misc	`conf`	Medical Concept Normalization via Description Prediction. AMIA Kahyun Lee, Sam Henry, Özlem Uzuner
2020	—	`conf`	SalamNET at SemEval-2020 Task 12: Deep Learning Approach for Arabic Offensive Language Detection. SemEval@COLING Fatemah Husain, Jooyeon Lee, Sam Henry, Özlem Uzuner
2020	J	`jnl`	SalamNET at SemEval-2020 Task12: Deep Learning Approach for Arabic Offensive Language Detection. CoRR Fatemah Husain, Jooyeon Lee, Samuel Henry, Özlem Uzuner
2020	J	`jnl`	The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records. J. Am. Medical Informatics Assoc. Sam Henry, Yanshan Wang, Feichen Shen, Özlem Uzuner
2019	—	`conf`	An Empirical Test of GRUs and Deep Contextualized Word Representations on De-Identification. MedInfo Kahyun Lee, Michele Filannino, Özlem Uzuner
2019	—	`conf`	An Exploratory Study on Pseudo-Data Generation in Prescription and Adverse Drug Reaction Extraction. MedInfo Carson Tao, Kahyun Lee, Michele Filannino, Özlem Uzuner
2019	Misc	`conf`	Automatic Identification of Social Determinants of Health from Clinical Records. AMIA Kevin Lybarger, Mari Ostendorf, Özlem Uzuner, Meliha Yetisgen
2019	Misc	`conf`	Clinical Text Mining in Mental Health. AMIA Jessica D. Tenenbaum, Ramakanth Kavuluru, Thomas H. McCoy, Özlem Uzuner, Sumithra Velupillai
2019	J	`jnl`	Cohort selection for clinical trials: n2c2 2018 shared task track 1. J. Am. Medical Informatics Assoc. Amber Stubbs, Michele Filannino, Ergin Soysal, Samuel Henry, Özlem Uzuner
2019	—	`conf`	Deep Learning for Identification of Adverse Effect Mentions In Twitter Data. SMM4H@ACL Paul Barry, Özlem Uzuner
2019	J	`jnl`	Editorial: The second international workshop on health natural language processing (HealthNLP 2019). BMC Medical Informatics Decis. Mak. Yanshan Wang, Hua Xu, Özlem Uzuner
2019	J	`jnl`	Extraction and Analysis of Clinically Important Follow-up Recommendations in a Large Radiology Dataset. CoRR Wilson Lau, Thomas H. Payne, Özlem Uzuner, Meliha Yetisgen
2019	J	`jnl`	New approaches to cohort selection. J. Am. Medical Informatics Assoc. Amber Stubbs, Özlem Uzuner
2018	J	`jnl`	Corrigendum to "Symptom severity prediction from neuropsychiatric clinical records: Overview of 2016 CEGS N-GRID shared tasks Track 2" [J Biomed Inform. 2017 Nov;75S: S62-S70]. J. Biomed. Informatics Michele Filannino, Amber Stubbs, Özlem Uzuner
2018	Misc	`conf`	Extracting ADRs from Drug Labels using Bi-LSTM and CRFs. AMIA Carson Tao, Michele Filannino, Özlem Uzuner
2018	Misc	`conf`	FABLE: A Semi-Supervised Prescription Information Extraction System. AMIA Carson Tao, Michele Filannino, Özlem Uzuner
2018	Misc	`conf`	Precision Medicine: matching cancer patients with clinical trials. AMIA Michele Filannino, Kahyun Lee, Di Jin, Kevin Buchan, William Boag, Özlem Uzuner
2018	Misc	`conf`	Precision Medicine: matching cancer patients with relevant treatments. AMIA Kahyun Lee, Michele Filannino, Di Jin, Kevin Buchan, William Boag, Özlem Uzuner
2018	J	`jnl`	Segment convolutional neural networks (Seg-CNNs) for classifying relations in clinical notes. J. Am. Medical Informatics Assoc. Yuan Luo, Yu Cheng, Özlem Uzuner, Peter Szolovits, Justin Starren
2017	—	`conf`	A Hybrid Approach to Precision Medicine-related Biomedical Article Retrieval and Clinical Trial Matching. TREC Yuan Ling, Sadid A. Hasan, Michele Filannino, Kevin P. Buchan, Kahyun Lee, Joey Liu, William Boag, Di Jin, Özlem Uzuner, Kathy Lee, Vivek V. Datla, Ashequl Qadir, Oladimeji Farri
2017	J	`jnl`	Automatic prediction of coronary artery disease from clinical narratives. J. Biomed. Informatics Kevin Buchan, Michele Filannino, Özlem Uzuner
2017	J	`jnl`	Bridging semantics and syntax with graph algorithms - state-of-the-art of extracting biomedical relations. Briefings Bioinform. Yuan Luo, Özlem Uzuner, Peter Szolovits
2017	J	`jnl`	Bridging semantics and syntax with graph algorithms - state-of-the-art of extracting biomedical relations. Briefings Bioinform. Yuan Luo, Özlem Uzuner, Peter Szolovits
2017	J	`jnl`	De-identification of patient notes with recurrent neural networks. J. Am. Medical Informatics Assoc. Franck Dernoncourt, Ji Young Lee, Özlem Uzuner, Peter Szolovits
2017	—	`conf`	Extracting and Normalizing Adverse Drug Reactions from Drug Labels. TAC Carson Tao, Kahyun Lee, Michele Filannino, Kevin Buchan, Kathy Lee, Tilak Raj Arora, Joey Liu, Oladimeji Farri, Özlem Uzuner
2017	J	`jnl`	Prescription extraction using CRFs and word embeddings. J. Biomed. Informatics Carson Tao, Michele Filannino, Özlem Uzuner
2016	J	`jnl`	De-identification of Patient Notes with Recurrent Neural Networks. CoRR Franck Dernoncourt, Ji Young Lee, Özlem Uzuner, Peter Szolovits
2016	J	`jnl`	Do Sentiments Matter in Fraud Detection? Estimating Semantic Orientation of Annual Reports. Intell. Syst. Account. Finance Manag. Sunita Goel, Özlem Uzuner
2016	J	`jnl`	E-petition popularity: Do linguistic and semantic factors matter? Gov. Inf. Q. Loni Hagen, Teresa M. Harrison, Özlem Uzuner, William May, Tim Fake, Satya Katragadda
2016	—	`conf`	Feature-Augmented Neural Networks for Patient Note De-identification. ClinicalNLP@COLING 2016 Ji Young Lee, Franck Dernoncourt, Özlem Uzuner, Peter Szolovits
2016	J	`jnl`	Feature-Augmented Neural Networks for Patient Note De-identification. CoRR Ji Young Lee, Franck Dernoncourt, Özlem Uzuner, Peter Szolovits
2016	Misc	`conf`	Natural Language Processing Working Group Pre-Symposium: Graduate Student Consortium and 'Hackathon'. AMIA Stéphane M. Meystre, Hongfang Liu, Rong Xu, Sivaram Arabandi, Kavishwar B. Wagholikar, Jon D. Patrick, Guergana K. Savova, Chunhua Weng, Pierre Zweigenbaum, Dina Demner-Fushman, Özlem Uzuner, Hua Xu
2015	J	`jnl`	A systematic comparison of feature space effects on disease classifier performance for phenotype identification of five diseases. J. Biomed. Informatics Christopher Kotfila, Özlem Uzuner
2015	J	`jnl`	Annotating longitudinal clinical narratives for de-identification: The 2014 i2b2/UTHealth corpus. J. Biomed. Informatics Amber Stubbs, Özlem Uzuner
2015	J	`jnl`	Annotating risk factors for heart disease in clinical narratives for diabetic patients. J. Biomed. Informatics Amber Stubbs, Özlem Uzuner
2015	J	`jnl`	Automated systems for the de-identification of longitudinal clinical narratives: Overview of 2014 i2b2/UTHealth shared task Track 1. J. Biomed. Informatics Amber Stubbs, Christopher Kotfila, Özlem Uzuner
2015	—	`ch.`	Challenges in Synthesizing Surrogate PHI in Narrative EMRs. Medical Data Privacy Handbook Amber Stubbs, Özlem Uzuner, Christopher Kotfila, Ira Goldstein, Peter Szolovits
2015	J	`jnl`	Creation of a new longitudinal corpus of clinical narratives. J. Biomed. Informatics Vishesh Kumar, Amber Stubbs, Stanley Y. Shaw, Özlem Uzuner
2015	J	`jnl`	Ease of adoption of clinical natural language processing software: An evaluation of five systems. J. Biomed. Informatics Kai Zheng, V. G. Vinod Vydiswaran, Yang Liu, Yue Wang, Amber Stubbs, Özlem Uzuner, Anupama E. Gururaj, Samuel Bayer, John S. Aberdeen, Anna Rumshisky, Serguei Pakhomov, Hongfang Liu, Hua Xu
2015	J	`jnl`	Identifying risk factors for heart disease over time: Overview of 2014 i2b2/UTHealth shared task Track 2. J. Biomed. Informatics Amber Stubbs, Christopher Kotfila, Hua Xu, Özlem Uzuner
2015	—	`conf`	Introducing textual analysis tools for policy informatics: a case study of e-petitions. DG.O Loni Hagen, Teresa M. Harrison, Özlem Uzuner, Tim Fake, Dan Lamanna, Christopher Kotfila
2015	J	`jnl`	Normalization of Relative and Incomplete Temporal Expressions in Clinical Narratives. CoRR Weiyi Sun, Anna Rumshisky, Özlem Uzuner
2015	J	`jnl`	Normalization of relative and incomplete temporal expressions in clinical narratives. J. Am. Medical Informatics Assoc. Weiyi Sun, Anna Rumshisky, Özlem Uzuner
2015	J	`jnl`	Practical applications for natural language processing in clinical research: The 2014 i2b2/UTHealth shared tasks. J. Biomed. Informatics Özlem Uzuner, Amber Stubbs
2015	Misc	`conf`	State of the Art of Clinical Narrative Report De-Identification and Its Future. AMIA Özlem Uzuner, John S. Aberdeen, Stéphane M. Meystre, Mehmet Kayaalp
2015	J	`jnl`	Subgraph augmented non-negative tensor factorization (SANTF) for modeling clinical narrative text. J. Am. Medical Informatics Assoc. Yuan Luo, Yu Xin, Ephraim P. Hochberg, Rohit Joshi, Özlem Uzuner, Peter Szolovits
2015	—	`conf`	Understanding Citizens' Direct Policy Suggestions to the Federal Government: A Natural Language Processing and Topic Modeling Approach. HICSS Loni Hagen, Özlem Uzuner, Christopher Kotfila, Teresa M. Harrison, Dan Lamanna
2014	—	`conf`	Biomedical/Clinical NLP. COLING (Tutorials) Özlem Uzuner, Meliha Yetisgen, Amber Stubbs
2014	J	`jnl`	Research and applications: Word sense disambiguation in the clinical domain: a comparison of knowledge-rich and knowledge-poor unsupervised methods. J. Am. Medical Informatics Assoc. Rachel Chasin, Anna Rumshisky, Özlem Uzuner, Peter Szolovits
2013	J	`jnl`	Annotating temporal information in clinical narratives. J. Biomed. Informatics Weiyi Sun, Anna Rumshisky, Özlem Uzuner
2013	J	`jnl`	Chronology of your health events: Approaches to extracting temporal relations from medical narratives. J. Biomed. Informatics Özlem Uzuner, Amber Stubbs, Weiyi Sun
2013	J	`jnl`	Evaluating temporal relations in clinical text: 2012 i2b2 Challenge. J. Am. Medical Informatics Assoc. Weiyi Sun, Anna Rumshisky, Özlem Uzuner
2013	—	`conf`	Multilingual Named-Entity Recognition from Parallel Corpora. CLEF (Working Notes) Andreea Bodnari, Aurélie Névéol, Özlem Uzuner, Pierre Zweigenbaum, Peter Szolovits
2013	J	`jnl`	Temporal reasoning over clinical text: the state of the art. J. Am. Medical Informatics Assoc. Weiyi Sun, Anna Rumshisky, Özlem Uzuner
2012	J	`jnl`	Evaluating the state of the art in coreference resolution for electronic medical records. J. Am. Medical Informatics Assoc. Özlem Uzuner, Andreea Bodnari, Shuying Shen, Tyler Forbush, John Pestian, Brett R. South
2012	Misc	`conf`	Evaluation and Visualization of Human Annotator Learning Patterns. AMIA Ying Suo, Shuying Shen, Scott L. DuVall, Özlem Uzuner, Brett R. South
2012	J	`jnl`	MCORES: a system for noun phrase coreference resolution for clinical records. J. Am. Medical Informatics Assoc. Andreea Bodnari, Peter Szolovits, Özlem Uzuner
2012	C	`conf`	Supporters in Deed - Studying Online Support Provision from the Perspective of Social Capital. ICIS Kuang-Yuan Huang, InduShobha N. Chengalur-Smith, Özlem Uzuner, Priya Nambisan, Namjoo Choi
2012	Misc	`conf`	Using UMLS for Word Sense Disambiguation in Clinical Notes. AMIA Anna Rumshisky, Rachel Chasin, Özlem Uzuner, Peter Szolovits
2011	J	`jnl`	2010 i2b2/VA challenge on concepts, assertions, and relations in clinical text. J. Am. Medical Informatics Assoc. Özlem Uzuner, Brett R. South, Shuying Shen, Scott L. DuVall
2011	J	`jnl`	A cascade of classifiers for extracting medication information from discharge summaries. J. Biomed. Semant. Scott R. Halgrim, Fei Xia, Imre Solti, Eithon Cadag, Özlem Uzuner
2011	J	`jnl`	Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J. Am. Medical Informatics Assoc. Wendy Webber Chapman, Prakash M. Nadkarni, Lynette Hirschman, Leonard W. D'Avolio, Guergana K. Savova, Özlem Uzuner
2010	J	`jnl`	Community annotation experiment for ground truth generation for the i2b2 medication challenge. J. Am. Medical Informatics Assoc. Özlem Uzuner, Imre Solti, Fei Xia, Eithon Cadag
2010	—	`conf`	Does negation really matter? NeSp-NLP@ACL Ira Goldstein, Özlem Uzuner
2010	—	`conf`	Extracting Medication Information from Discharge Summaries. Louhi@NAACL-HLT Scott R. Halgrim, Fei Xia, Imre Solti, Eithon Cadag, Özlem Uzuner
2010	J	`jnl`	Extracting medication information from clinical text. J. Am. Medical Informatics Assoc. Özlem Uzuner, Imre Solti, Eithon Cadag
2010	C	`conf`	Informational Support or Emotional Support: Preliminary Study of an Automated Approach to Analyze Online Support Community Contents. ICIS Kuang-Yuan Huang, Priya Nambisan, Özlem Uzuner
2010	J	`jnl`	Semantic relations for problem-oriented medical records. Artif. Intell. Medicine Özlem Uzuner, Jonathan Mailoa, Russell Ryan, Tawanda C. Sibanda
2009	J	`jnl`	Research Paper: Machine Learning and Rule-based Approaches to Assertion Classification. J. Am. Medical Informatics Assoc. Özlem Uzuner, Xiaoran Zhang, Tawanda C. Sibanda
2009	—	`conf`	Role of preferred terminology in the classification of medical reports. ISCIS Ira Goldstein, Özlem Uzuner
2009	J	`jnl`	Specializing for predicting obesity and its co-morbidities. J. Biomed. Informatics Ira Goldstein, Özlem Uzuner
2009	J	`jnl`	Viewpoint Paper: Recognizing Obesity and Comorbidities in Sparse Data. J. Am. Medical Informatics Assoc. Özlem Uzuner
2008	J	`jnl`	A de-identifier for medical discharge summaries. Artif. Intell. Medicine Özlem Uzuner, Tawanda C. Sibanda, Yuan Luo, Peter Szolovits
2008	J	`jnl`	Letters to the Editor: No Structure Before Its Time. J. Am. Medical Informatics Assoc. Isaac S. Kohane, Özlem Uzuner
2008	Misc	`conf`	Two Approaches to Assertion Classification. AMIA Özlem Uzuner, Xiaoran Zhang, Tawanda C. Sibanda
2008	J	`jnl`	Viewpoint Paper: Identifying Patient Smoking Status from Medical Discharge Records. J. Am. Medical Informatics Assoc. Özlem Uzuner, Ira Goldstein, Yuan Luo, Isaac S. Kohane
2007	Misc	`conf`	Three Approaches to Automatic Assignment of ICD-9-CM Codes to Radiology Reports. AMIA Ira Goldstein, Anna Arzumtsyan, Özlem Uzuner
2007	J	`jnl`	Viewpoint Paper: Evaluating the State-of-the-Art in Automatic De-identification. J. Am. Medical Informatics Assoc. Özlem Uzuner, Yuan Luo, Peter Szolovits
2006	—	`conf`	Linguistically informed digital fingerprints for text. Security, Steganography, and Watermarking of Multimedia Contents Özlem Uzuner
2006	—	`conf`	Question Answering Experiments and Resources. TREC Boris Katz, Gregory Marton, Sue Felshin, Daniel Loreto, Ben Lu, Federico Mora, Özlem Uzuner, Michael McGraw-Herdeg, Natalie Cheung, Alexey Radul, Yuan Kui Shen, Yuan Luo, Gabriel Zaccak
2006	—	`conf`	Role of Local Context in Automatic Deidentification of Ungrammatical, Fragmented Text. HLT-NAACL Tawanda C. Sibanda, Özlem Uzuner
2006	J	`jnl`	Stylistics for text retrieval in practice: SIGIR 2006 workshop, Seattle, August 10, 2006. SIGIR Forum Özlem Uzuner, Shlomo Argamon, Jussi Karlgren
2006	Misc	`conf`	Syntactically-Informed Semantic Category Recognizer for Discharge Summaries. AMIA Tawanda C. Sibanda, Tian He, Peter Szolovits, Özlem Uzuner
2005	B	`conf`	A Comparative Study of Language Models for Book and Author Recognition. IJCNLP Özlem Uzuner, Boris Katz
2005	A*	`conf`	Capturing Expression Using Linguistic Information. AAAI Özlem Uzuner, Boris Katz
2005	—	`conf`	External Knowledge Sources for Question Answering. TREC Boris Katz, Gregory Marton, Gary C. Borchardt, Alexis Brownell, Sue Felshin, Daniel Loreto, Jesse Louis-Rosenberg, Ben Lu, Federico Mora, Stephan Stiller, Özlem Uzuner, Angela Wilcox
2005	—	`conf`	Lexical Chains and Sliding Locality Windows in Content-based Text Similarity Detection. IJCNLP (companion) Thade Nahnsen, Özlem Uzuner, Boris Katz
2004	—	`conf`	Answering Multiple Questions on a Topic From Heterogeneous Resources. TREC Boris Katz, Matthew W. Bilotti, Sue Felshin, Aaron Fernandes, Wesley Hildebrandt, Roni Katzir, Jimmy Lin, Daniel Loreto, Gregory Marton, Federico Mora, Özlem Uzuner
2004	—	`conf`	Using Empirical Methods for Evaluating Expression and Content Similarity. HICSS Özlem Uzuner, Randall Davis, Boris Katz
2003	—	`conf`	Better Public Policy Through Natural Language Information Access. DG.O Boris Katz, Roger Hurwitz, Jimmy Lin, Özlem Uzuner
2003	—	`conf`	Content and expression-based copy recognition for intellectual property protection. Digital Rights Management Workshop Özlem Uzuner, Randall Davis
2003	—	`conf`	START: A Framework for Facilitating E-Rulemaking. DG.O Boris Katz, Roger Hurwitz, Jimmy Lin, Özlem Uzuner
2001	—	`conf`	Sales Tax on the Internet: When and How to Tax? HICSS Özlem Uzuner, Lee W. McKnight
1999	—	`conf`	Word Sense Disambiguation for Information Retrieval. AAAI/IAAI Özlem Uzuner, Boris Katz, Deniz Yuret