Zülal Bingöl

12 papers A* 2A 1Journal 8Unranked 1

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	FASTR: Reimagining FASTQ via Compact Image-inspired Representation. CoRR Adrian Tkachenko, Sepehr Salem, Ayotomiwa Ezekiel Adeniyi, Zülal Bingöl, Mohammed Nayeem Uddin, Akshat Prasanna, Alexander Zelikovsky, Serghei Mangul, Can Alkan, Mohammed Alser
2025	A	`conf`	Revisiting Main Memory-Based Covert and Side Channel Attacks in the Context of Processing-in-Memory. DSN F. Nisa Bostanci, Konstantinos Kanellopoulos, Ataberk Olgun, A. Giray Yaglikçi, Ismail Emir Yüksel, Nika Mansouri-Ghiasi, Zülal Bingöl, Mohammad Sadrosadati, Onur Mutlu
2024	J	`jnl`	Amplifying Main Memory-Based Timing Covert and Side Channels using Processing-in-Memory Operations. CoRR Konstantinos Kanellopoulos, F. Nisa Bostanci, Ataberk Olgun, Abdullah Giray Yaglikçi, Ismail Emir Yuksel, Nika Mansouri-Ghiasi, Zülal Bingöl, Mohammad Sadrosadati, Onur Mutlu
2024	J	`jnl`	GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping. IEEE Trans. Computers Zülal Bingöl, Mohammed Alser, Onur Mutlu, Ozcan Ozturk, Can Alkan
2022	J	`jnl`	SeGraM: A Universal Hardware Accelerator for Genomic Sequence-to-Graph and Sequence-to-Sequence Mapping. CoRR Damla Senol Cali, Konstantinos Kanellopoulos, Joël Lindegger, Zülal Bingöl, Gurpreet S. Kalsi, Ziyi Zuo, Can Firtina, Meryem Banu Cavlak, Jeremie S. Kim, Nika Mansouri-Ghiasi, Gagandeep Singh, Juan Gómez-Luna, Nour Almadhoun Alserr, Mohammed Alser, Sreenivas Subramoney, Can Alkan, Saugata Ghose, Onur Mutlu
2022	A*	`conf`	SeGraM: a universal hardware accelerator for genomic sequence-to-graph and sequence-to-sequence mapping. ISCA Damla Senol Cali, Konstantinos Kanellopoulos, Joël Lindegger, Zülal Bingöl, Gurpreet S. Kalsi, Ziyi Zuo, Can Firtina, Meryem Banu Cavlak, Jeremie S. Kim, Nika Mansouri-Ghiasi, Gagandeep Singh, Juan Gómez-Luna, Nour Almadhoun Alserr, Mohammed Alser, Sreenivas Subramoney, Can Alkan, Saugata Ghose, Onur Mutlu
2021	—	`conf`	GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping. IPDPS Workshops Zülal Bingöl, Mohammed Alser, Onur Mutlu, Ozcan Ozturk, Can Alkan
2021	J	`jnl`	GateKeeper-GPU: Fast and Accurate Pre-Alignment Filtering in Short Read Mapping. CoRR Zülal Bingöl, Mohammed Alser, Onur Mutlu, Ozcan Ozturk, Can Alkan
2020	J	`jnl`	Accelerating Genome Analysis: A Primer on an Ongoing Journey. CoRR Mohammed Alser, Zülal Bingöl, Damla Senol Cali, Jeremie S. Kim, Saugata Ghose, Can Alkan, Onur Mutlu
2020	J	`jnl`	Accelerating Genome Analysis: A Primer on an Ongoing Journey. IEEE Micro Mohammed Alser, Zülal Bingöl, Damla Senol Cali, Jeremie S. Kim, Saugata Ghose, Can Alkan, Onur Mutlu
2020	A*	`conf`	GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis. MICRO Damla Senol Cali, Gurpreet S. Kalsi, Zülal Bingöl, Can Firtina, Lavanya Subramanian, Jeremie S. Kim, Rachata Ausavarungnirun, Mohammed Alser, Juan Gómez-Luna, Amirali Boroumand, Anant Nori, Allison Scibisz, Sreenivas Subramoney, Can Alkan, Saugata Ghose, Onur Mutlu
2020	J	`jnl`	GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis. CoRR Damla Senol Cali, Gurpreet S. Kalsi, Zülal Bingöl, Can Firtina, Lavanya Subramanian, Jeremie S. Kim, Rachata Ausavarungnirun, Mohammed Alser, Juan Gómez-Luna, Amirali Boroumand, Anant Nori, Allison Scibisz, Sreenivas Subramoney, Can Alkan, Saugata Ghose, Onur Mutlu