Zuoshuang Xiang

36 papers Journal 25Unranked 11
YearRankTypeTitle / Venue / Authors
2021 J jnl
Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.
Nucleic Acids Res.
Edison Ong, Michael F. Cooke, Anthony Huffman, Zuoshuang Xiang, Mei U. Wong, Haihe Wang, Meenakshi Seetharaman, Ninotchka Valdez, Yongqun He
2019 J jnl
Victors: a web-based knowledge base of virulence factors in human and animal pathogens.
Nucleic Acids Res.
Samantha Sayers, Li Li, Edison Ong, Shunzhou Deng, Guanghua Fu, Yu Lin, Brian Yang, Shelley Zhang, Zhenzong Fa, Bin Zhao, Zuoshuang Xiang, Yongqing Li, Xing-Ming Zhao, Michal Olszewski, Luonan Chen, Yongqun He
2018 J jnl
The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.
J. Biomed. Semant.
Yongqun He, Zuoshuang Xiang, Jie Zheng, Yu Lin, James A. Overton, Edison Ong
2017 J jnl
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.
Nucleic Acids Res.
Edison Ong, Zuoshuang Xiang, Bin Zhao, Yue Liu, Yu Lin, Jie Zheng, Chris Mungall, Mélanie Courtot, Alan Ruttenberg, Yongqun He
2016 — conf
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks.
ICBO/BioCreative
Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He
2016 — conf
Ontobull and BFOConvert: Web-based Programs to Support Automatic Ontology Conversion.
ICBO/BioCreative
Edison Ong, Zuoshuang Xiang, Jie Zheng, Barry Smith, Yongqun He
2016 J jnl
Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events.
J. Biomed. Semant.
Abra Guo, Rebecca Racz, Junguk Hur, Yu Lin, Zuoshuang Xiang, Lili Zhao, Jordan Rinder, Guoqian Jiang, Qian Zhu, Yongqun He
2015 J jnl
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.
J. Biomed. Semant.
Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He
2015 J jnl
Ontology-based representation and analysis of host-Brucella interactions.
J. Biomed. Semant.
Yu Lin, Zuoshuang Xiang, Yongqun He
2015 J jnl
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns.
J. Biomed. Semant.
Zuoshuang Xiang, Jie Zheng, Yu Lin, Yongqun He
2014 J jnl
CLO: The cell line ontology.
J. Biomed. Semant.
Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma D. Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey, David J. States, Brian D. Athey, Yongqun He
2014 J jnl
DNAVaxDB: the first web-based DNA vaccine database and its data analysis.
BMC Bioinform.
Rebecca Racz, Xinna Li, Mukti Patel, Zuoshuang Xiang, Yongqun He
2014 J jnl
OAE: The Ontology of Adverse Events.
J. Biomed. Semant.
Yongqun He, Sirarat Sarntivijai, Yu Lin, Zuoshuang Xiang, Abra Guo, Shelley Zhang, Desikan Jagannathan, Luca Toldo, Cui Tao, Barry Smith
2014 — conf
Ontobat: An Ontology-based Semantic Web Approach for Linked Data Processing and Analysis.
ICBO
Zuoshuang Xiang, Yu Lin, Yongqun He
2014 J jnl
Ontodog: a web-based ontology community view generation tool.
Bioinform.
Jie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He
2014 J jnl
Updates on the web-based VIOLIN vaccine database and analysis system.
Nucleic Acids Res.
Yongqun He, Rebecca Racz, Samantha Sayers, Yu Lin, Thomas E. Todd, Junguk Hur, Xinna Li, Mukti Patel, Boyang Zhao, Monica Chung, Joseph Ostrow, Andrew Sylora, Priya Dungarani, Guerlain Ulysse, Kanika Kochhar, Boris Vidri, Kelsey Strait, George W. Jourdian, Zuoshuang Xiang
2013 J jnl
A genome-wide MeSH-based literature mining system predicts implicit gene-to-gene relationships and networks.
BMC Syst. Biol.
Zuoshuang Xiang, Tingting Qin, Zhaohui S. Qin, Yongqun He
2013 J jnl
Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology.
BMC Bioinform.
Zuoshuang Xiang, Yongqun He
2013 — conf
HINO: BFO-aligned ontology representation of human molecular interactions and pathways.
ICBO
Zuoshuang Xiang, Yongqun He
2013 J jnl
HINO: a BFO-aligned ontology representing human molecular interactions and pathways.
CoRR
Yongqun He, Zuoshuang Xiang
2013 J jnl
Meta-analysis of variables affecting mouse protection efficacy of whole organism Brucella vaccines and vaccine candidates.
BMC Bioinform.
Thomas E. Todd, Omar Tibi, Yu Lin, Samantha Sayers, Denise N. Bronner, Zuoshuang Xiang, Yongqun He
2012 J jnl
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining.
J. Biomed. Semant.
Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He
2012 — conf
Ontodog: A Web-based Ontology Community View Generator.
ICBO
Jie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He
2012 — conf
Ontorat web server for automatic generation and annotations of new ontology terms.
ICBO
Zuoshuang Xiang, Yu Lin, Yongqun He
2011 — conf
AEO: A Realism-Based Biomedical Ontology for the Representation of Adverse Events.
ICBO
Yongqun He, Zuoshuang Xiang, Sirarat Sarntivijai, Luca Toldo, Werner Ceusters
2011 J jnl
Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology.
J. Biomed. Semant.
Yu Lin, Zuoshuang Xiang, Yongqun He
2011 — conf
Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics.
ICBO
Sirarat Sarntivijai, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Brian D. Athey, Yongqun He
2011 J jnl
Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology.
J. Biomed. Semant.
Arzucan Özgür, Zuoshuang Xiang, Dragomir R. Radev, Yongqun He
2011 — conf
OntoFox and its Application in Development of Brucellosis Ontology.
ICBO
Zuoshuang Xiang, Yu Lin, Yongqun He
2011 — conf
Ontobee: A Linked Data Server and Browser for Ontology Terms.
ICBO
Zuoshuang Xiang, Chris Mungall, Alan Ruttenberg, Yongqun He
2011 J jnl
Protegen: a web-based protective antigen database and analysis system.
Nucleic Acids Res.
Brian Yang, Samantha Sayers, Zuoshuang Xiang, Yongqun He
2011 — conf
Towards a Semantic Web Application: Ontology-Driven Ortholog Clustering Analysis.
ICBO
Yu Lin, Zuoshuang Xiang, Yongqun He
2008 J jnl
VIOLIN: vaccine investigation and online information network.
Nucleic Acids Res.
Zuoshuang Xiang, Thomas E. Todd, Kim P. Ku, Bethany L. Kovacic, Charles B. Larson, Fang Chen, Andrew P. Hodges, Yuying Tian, Elizabeth A. Olenzek, Boyang Zhao, Lesley A. Colby, Howard G. Rush, Janet R. Gilsdorf, George W. Jourdian, Yongqun He
2007 J jnl
CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.
Bioinform.
Zuoshuang Xiang, Zhaohui S. Qin, Yongqun He
2007 J jnl
miniTUBA: medical inference by network integration of temporal data using Bayesian analysis.
Bioinform.
Zuoshuang Xiang, Rebecca M. Minter, Xiaoming Bi, Peter J. Woolf, Yongqun He
2006 J jnl
BBP:
BMC Bioinform.
Zuoshuang Xiang, Wenjie Zheng, Yongqun He