Zongliang Yue

24 papers Misc 1Journal 20Unranked 3
YearRankTypeTitle / Venue / Authors
2026 J jnl
Federated-inspired Single-cell Batch Integration in Latent Space.
CoRR
Quang-Huy Nguyen, Zongliang Yue, Hao Chen, Wei-Shinn Ku, Jiaqi Wang
2025 J jnl
Autonomous Decision-Making Enhancing Natural Disaster Management through Open World Machine Learning: A Systematic Review.
Hum. Centric Intell. Syst.
Nikitas Gerolimos, Vasileios Alevizos, Sabrina Edralin, Clark Xu, Georgios Priniotakis, George A. Papakostas, Zongliang Yue
2025 J jnl
Optimizing Carbon Footprint in ICT through Swarm Intelligence with Algorithmic Complexity.
CoRR
Vasileios Alevizos, Nikitas Gerolimos, Sabrina Edralin, Clark Xu, Akebu Simasiku, Georgios Priniotakis, George A. Papakostas, Zongliang Yue
2025 — conf
Systematic Review on Sustainable Design Thinking Through Biomimetic Approach.
ICAIIC
Vasileios Alevizos, Nikitas Gerolimos, Sabrina Edralin, Clark Xu, Akebu Simasiku, Georgios Priniotakis, George A. Papakostas, Zongliang Yue
2024 J jnl
Handwriting Anomalies and Learning Disabilities through Recurrent Neural Networks and Geometric Pattern Analysis.
CoRR
Vasileios Alevizos, Sabrina Edralin, Akebu Simasiku, Dimitra Malliarou, Antonis Messinis, George A. Papakostas, Clark Xu, Zongliang Yue
2024 J jnl
Integrating Artificial Open Generative Artificial Intelligence into Software Supply Chain Security.
CoRR
Vasileios Alevizos, George A. Papakostas, Akebu Simasiku, Dimitra Malliarou, Antonis Messinis, Sabrina Edralin, Clark Xu, Zongliang Yue
2024 J jnl
Logarithmic Positional Partition Interval Encoding.
CoRR
Vasileios Alevizos, Nikitas Gerolimos, Sabrina Edralin, Clark Xu, Akebu Simasiku, Georgios Priniotakis, George A. Papakostas, Zongliang Yue
2024 J jnl
PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis.
Frontiers Bioinform.
Fengyuan Huang, Robert S. Welner, Jake Y. Chen, Zongliang Yue
2022 J jnl
DEMA: a distance-bounded energy-field minimization algorithm to model and layout biomolecular networks with quantitative features.
Bioinform.
Zhenyu Weng, Zongliang Yue, Yuesheng Zhu, Jake Yue Chen
2022 J jnl
WINNER: A network biology tool for biomolecular characterization and prioritization.
Frontiers Big Data
Thanh Nguyen, Zongliang Yue, Radomir Slominski, Robert S. Welner, Jianyi Zhang, Jake Y. Chen
2021 J jnl
Corrigendum: Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples.
Frontiers Big Data
Thanh Nguyen, Samuel Bharti, Zongliang Yue, Christopher D. Willey, Jake Y. Chen
2021 Misc conf
PAGER-CoV-Run: An online interactive analytical platform for COVID-19 functional genomic downstream analysis.
AMIA
Zongliang Yue, Nishant Batra, Hui-Chen Hsu, John Mountz, Jake Y. Chen
2021 J jnl
PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.
Nucleic Acids Res.
Zongliang Yue, Eric Zhang, Clark Xu, Sunny Khurana, Nishant Batra, Son Do Hai Dang, James J. Cimino, Jake Y. Chen
2021 J jnl
Statistical Enrichment Analysis of Samples: A General-Purpose Tool to Annotate Metadata Neighborhoods of Biological Samples.
Frontiers Big Data
Thanh Nguyen, Samuel Bharti, Zongliang Yue, Christopher D. Willey, Jake Y. Chen
2019 J jnl
BEERE: a web server for biomedical entity expansion, ranking and explorations.
Nucleic Acids Res.
Zongliang Yue, Christopher D. Willey, Anita B. Hjelmeland, Jake Y. Chen
2019 J jnl
WIPER: Weighted in-Path Edge Ranking for biomolecular association networks.
Quant. Biol.
Zongliang Yue, Thanh Nguyen, Eric Zhang, Jianyi Zhang, Jake Y. Chen
2018 J jnl
"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Timothy Ratliff, Jake Y. Chen
2018 J jnl
PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology.
Nucleic Acids Res.
Zongliang Yue, Qi Zheng, Michael T. Neylon, Minjae Yoo, Jimin Shin, Zhiying Zhao, Aik Choon Tan, Jake Y. Chen
2017 J jnl
Repositioning drugs by targeting network modules: a Parkinson's disease case study.
BMC Bioinform.
Zongliang Yue, Itika Arora, Eric Y. Zhang, Vincent Laufer, S. Louis Bridges, Jake Y. Chen
2016 — conf
Towards constructing "Super Gene Sets" regulatory networks.
BIBM
Jake Y. Chen, Zongliang Yue, Michael T. Neylon, Thanh Nguyen, Nafisa Bulsara, Itika Arora, Timothy Ratliff
2015 J jnl
DMAP: a connectivity map database to enable identification of novel drug repositioning candidates.
BMC Bioinform.
Hui Huang, Thanh Nguyen, Sara Ibrahim, Sandeep Shantharam, Zongliang Yue, Jake Y. Chen
2015 J jnl
PAGER: constructing PAGs and new PAG-PAG relationships for network biology.
Bioinform.
Zongliang Yue, Madhura M. Kshirsagar, Thanh Nguyen, Chayaporn Suphavilai, Michael T. Neylon, Liugen Zhu, Timothy Ratliff, Jake Yue Chen
2014 — conf
Computational Identification of De-Centric Genetic Regulatory Relationships from Functional Genomic Data.
ISBRA
Zongliang Yue, Ping Wan, Zhan Xie, Jake Y. Chen
2014 J jnl
SLDR: a computational technique to identify novel genetic regulatory relationships.
BMC Bioinform.
Zongliang Yue, Ping Wan, Hui Huang, Zhan Xie, Jake Yue Chen