Zohar Yakhini

94 papers A* 2A 3B 17C 5Misc 2Journal 58Unranked 7
YearRankTypeTitle / Venue / Authors
2026 J jnl
A Security Framework for Chemical Functions.
CoRR
Frederik Walter, Hrishi Narayanan, Jessica Bariffi, Anne Lüscher, Rawad Bitar, Robert Grass, Antonia Wachter-Zeh, Zohar Yakhini
2025 B conf
Constrained Coding for Composite DNA: Channel Capacity and Efficient Constructions.
ISIT
Tuan Thanh Nguyen, Chen Wang, Kui Cai, Yiwei Zhang, Zohar Yakhini
2025 J jnl
Constrained Coding for Composite DNA: Channel Capacity and Efficient Constructions.
CoRR
Tuan Thanh Nguyen, Chen Wang, Kui Cai, Yiwei Zhang, Zohar Yakhini
2025 — conf
Rank Modulated Composite Encoding for Data Storage in DNA.
ISTC
Tomer Cohen, Zhiying Wang, Eitan Yaakobi, Zohar Yakhini
2025 J jnl
The Labeled Coupon Collector Problem with Random Sample Sizes and Partial Recovery.
CoRR
Shoham Shimon Berrebi, Eitan Yaakobi, Zohar Yakhini, Daniella Bar-Lev
2025 B conf
The Labeled Coupon Collector Problem.
ITW
Andrew Tan, Oriel Limor, Daniella Bar-Lev, Ryan Gabrys, Zohar Yakhini, Paul H. Siegel
2025 J jnl
The Labeled Coupon Collector Problem.
CoRR
Andrew Tan, Oriel Limor, Daniella Bar-Lev, Ryan Gabrys, Zohar Yakhini, Paul H. Siegel
2025 J jnl
The Supervised Information Bottleneck.
Entropy
Nir Weingarten, Zohar Yakhini, Moshe Butman, Ronit Bustin
2024 J jnl
Coding Theory and Algorithms for Emerging Technologies in Synthetic Biology (Dagstuhl Seminar 24511).
Dagstuhl Reports
R. B., Olgica Milenkovic, Zohar Yakhini, Yonatan Yehezkeally, Anisha Banerjee, Frederik Walter
2024 — conf
Efficient Random Sampling from Very Large Databases.
DEXA (1)
Idan Cohen, Aviv Yehezkel, Zohar Yakhini
2024 B conf
Error-Correcting Codes for Combinatorial Composite DNA.
ISIT
Omer Sabary, Inbal Preuss, Ryan Gabrys, Zohar Yakhini, Leon Anavy, Eitan Yaakobi
2024 J jnl
Error-Correcting Codes for Combinatorial DNA Composite.
CoRR
Omer Sabary, Inbal Preuss, Ryan Gabrys, Zohar Yakhini, Leon Anavy, Eitan Yaakobi
2024 J jnl
Generative Topological Networks.
CoRR
Alona Levy-Jurgenson, Zohar Yakhini
2024 J jnl
HIPI: Spatially resolved multiplexed protein expression inferred from H&E WSIs.
PLoS Comput. Biol.
Ron Zeira, Leon Anavy, Zohar Yakhini, Ehud Rivlin, Daniel Freedman
2024 J jnl
High Information Density and Low Coverage Data Storage in DNA with Efficient Channel Coding Schemes.
CoRR
Yi Ding, Xuan He, Tuan Thanh Nguyen, Wentu Song, Zohar Yakhini, Eitan Yaakobi, Linqiang Pan, Xiaohu Tang, Kui Cai
2024 J jnl
Privacy Preserving Feature Selection for Sparse Linear Regression.
Proc. Priv. Enhancing Technol.
Adi Akavia, Ben Galili, Hayim Shaul, Mor Weiss, Zohar Yakhini
2024 B conf
Representing Information on DNA Using Patterns Induced by Enzymatic Labeling.
ISIT
Daniella Bar-Lev, Tuvi Etzion, Eitan Yaakobi, Zohar Yakhini
2024 J jnl
Representing Information on DNA using Patterns Induced by Enzymatic Labeling.
CoRR
Daniella Bar-Lev, Tuvi Etzion, Eitan Yaakobi, Zohar Yakhini
2024 J jnl
Sequence Design and Reconstruction Under the Repeat Channel in Enzymatic DNA Synthesis.
IEEE Trans. Commun.
Roy Shafir, Omer Sabary, Leon Anavy, Eitan Yaakobi, Zohar Yakhini
2024 J jnl
Sequencing Coverage Analysis for Combinatorial DNA-Based Storage Systems.
IEEE Trans. Mol. Biol. Multi Scale Commun.
Inbal Preuss, Ben Galili, Zohar Yakhini, Leon Anavy
2024 B conf
Studying the Cycle Complexity of DNA Synthesis.
ITW
Amit Zrihan, Eitan Yaakobi, Zohar Yakhini
2024 J jnl
Studying the Cycle Complexity of DNA Synthesis.
CoRR
Amit Zrihan, Eitan Yaakobi, Zohar Yakhini
2024 J jnl
Tighter Bounds on the Information Bottleneck with Application to Deep Learning.
CoRR
Nir Weingarten, Zohar Yakhini, Moshe Butman, Ran Gilad-Bachrach
2023 A conf
Efficient Privacy-Preserving Viral Strain Classification via k-mer Signatures and FHE.
CSF
Adi Akavia, Ben Galili, Hayim Shaul, Mor Weiss, Zohar Yakhini
2023 J jnl
Efficient Privacy-Preserving Viral Strain Classification via k-mer Signatures and FHE.
IACR Cryptol. ePrint Arch.
Adi Akavia, Ben Galili, Hayim Shaul, Mor Weiss, Zohar Yakhini
2023 J jnl
Privacy Preserving Feature Selection for Sparse Linear Regression.
IACR Cryptol. ePrint Arch.
Adi Akavia, Ben Galili, Hayim Shaul, Mor Weiss, Zohar Yakhini
2022 J jnl
Generating Alerts from Breathing Pattern Outliers.
Sensors
Chloé Benmussa, Jessica R. Cauchard, Zohar Yakhini
2021 J jnl
Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging.
Bioinform.
Alona Levy-Jurgenson, Xavier Tekpli, Zohar Yakhini
2021 A* conf
Autoencoder Image Interpolation by Shaping the Latent Space.
ICML
Alon Oring, Zohar Yakhini, Yacov Hel-Or
2021 J jnl
Erratum to: Assessing heterogeneity in spatial data using the HTA index with applications to spatial transcriptomics and imaging.
Bioinform.
Alona Levy-Jurgenson, Xavier Tekpli, Zohar Yakhini
2021 J jnl
On the stability of log-rank test under labeling errors.
Bioinform.
Ben Galili, Anat Samohi, Zohar Yakhini
2021 J jnl
On the stability of log-rank test under labeling errors.
Bioinform.
Ben Galili, Anat Samohi, Zohar Yakhini
2021 J jnl
SOLQC: Synthetic Oligo Library Quality Control tool.
Bioinform.
Omer Sabary, Yoav Orlev, Roy Shafir, Leon Anavy, Eitan Yaakobi, Zohar Yakhini
2021 B conf
Sequence Reconstruction Under Stutter Noise in Enzymatic DNA Synthesis.
ITW
Roy Shafir, Omer Sabary, Leon Anavy, Eitan Yaakobi, Zohar Yakhini
2021 J jnl
miRNA normalization enables joint analysis of several datasets to increase sensitivity and to reveal novel miRNAs differentially expressed in breast cancer.
PLoS Comput. Biol.
Shay Ben-Elazar, Miriam Ragle Aure, Kristin Jonsdottir, Suvi-Katri Leivonen, Vessela N. Kristensen, Emiel A. M. Janssen, Kristine Kleivi Sahlberg, Ole Christian Lingjærde, Zohar Yakhini
2020 J jnl
Faithful Autoencoder Interpolation by Shaping the Latent Space.
CoRR
Alon Oring, Zohar Yakhini, Yacov Hel-Or
2020 B conf
IoT or NoT: Identifying IoT Devices in a Short Time Scale.
NOMS
Anat Bremler-Barr, Haim Levy, Zohar Yakhini
2019 J jnl
IoT or NoT: Identifying IoT Devices in a ShortTime Scale.
CoRR
Anat Bremler-Barr, Haim Levy, Zohar Yakhini
2019 — conf
Linear-Regression on Packed Encrypted Data in the Two-Server Model.
WAHC@CCS
Adi Akavia, Hayim Shaul, Mor Weiss, Zohar Yakhini
2019 J jnl
Linear-Regression on Packed Encrypted Data in the Two-Server Model.
IACR Cryptol. ePrint Arch.
Adi Akavia, Hayim Shaul, Mor Weiss, Zohar Yakhini
2019 — conf
Predicting Methylation from Sequence and Gene Expression Using Deep Learning with Attention.
AlCoB
Alona Levy-Jurgenson, Xavier Tekpli, Vessela N. Kristensen, Zohar Yakhini
2018 J jnl
SMARTIV: combined sequence and structure de-novo motif discovery for in-vivo RNA binding data.
Nucleic Acids Res.
Maya Polishchuk, Inbal Paz, Zohar Yakhini, Yael Mandel-Gutfreund
2017 J jnl
Mutual enrichment in aggregated ranked lists with applications to gene expression regulation.
Bioinform.
Dalia Cohn-Alperovich, Alona Rabner, Ilona Kifer, Yael Mandel-Gutfreund, Zohar Yakhini
2017 J jnl
Optimizing Analytical Depth and Cost Efficiency of IEF-LC/MS Proteomics.
IEEE ACM Trans. Comput. Biol. Bioinform.
Ilona Kifer, Rui Mamede Branca, Amir Ben-Dor, Linhui Zhai, Ping Xu, Janne Lehtiö, Zohar Yakhini
2016 J jnl
Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data.
Bioinform.
Shay Ben-Elazar, Benny Chor, Zohar Yakhini
2016 J jnl
Mutual enrichment in aggregated ranked lists with applications to gene expression regulation.
Bioinform.
Dalia Cohn-Alperovich, Alona Rabner, Ilona Kifer, Yael Mandel-Gutfreund, Zohar Yakhini
2015 J jnl
ENViz: a Cytoscape App for integrated statistical analysis and visualization of sample-matched data with multiple data types.
Bioinform.
Israel Steinfeld, Roy Navon, Michael L. Creech, Zohar Yakhini, Anya Tsalenko
2015 J jnl
RNAPattMatch: a web server for RNA sequence/structure motif detection based on pattern matching with flexible gaps.
Nucleic Acids Res.
Matan Drory Retwitzer, Maya Polishchuk, Elena Churkin, Ilona Kifer, Zohar Yakhini, Danny Barash
2014 J jnl
Mutual enrichment in ranked lists and the statistical assessment of position weight matrix motifs.
Algorithms Mol. Biol.
Limor Leibovich, Zohar Yakhini
2014 — conf
Optimizing analytical depth and cost efficiency of IEF-LC/MS proteomics.
BIBM
Ilona Kifer, Amir Ben-Dor, Zohar Yakhini, Rui Mamede Branca, Janne Lehtiö, Ping Xu
2013 J jnl
DRIMust: a web server for discovering rank imbalanced motifs using suffix trees.
Nucleic Acids Res.
Limor Leibovich, Inbal Paz, Zohar Yakhini, Yael Mandel-Gutfreund
2013 C conf
Mutual Enrichment in Ranked Lists and the Statistical Assessment of Position Weight Matrix Motifs.
WABI
Limor Leibovich, Zohar Yakhini
2013 J jnl
On the Sample Complexity of Learning Bayesian Networks
CoRR
Nir Friedman, Zohar Yakhini
2012 J jnl
A Distance-Based Branch and Bound Feature Selection Algorithm
CoRR
Ari Frank, Dan Geiger, Zohar Yakhini
2012 J jnl
Dotted interval graphs.
ACM Trans. Algorithms
Yonatan Aumann, Moshe Lewenstein, Oren Melamud, Ron Y. Pinter, Zohar Yakhini
2011 J jnl
Cancer Computational Biology.
BMC Bioinform.
Zohar Yakhini, Igor Jurisica
2008 C conf
Clinically driven semi-supervised class discovery in gene expression data.
ECCB
Israel Steinfeld, Roy Navon, Diego Ardigò, Ivana Zavaroni, Zohar Yakhini
2007 J jnl
A supervised approach for identifying discriminating genotype patterns and its application to breast cancer data.
Bioinform.
Nir Yosef, Zohar Yakhini, Anya Tsalenko, Vessela N. Kristensen, Anne-Lise Børresen-Dale, Eytan Ruppin, Roded Sharan
2007 J jnl
Discovering Motifs in Ranked Lists of DNA Sequences.
PLoS Comput. Biol.
Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini
2007 B conf
Framework for Identifying Common Aberrations in DNA Copy Number Data.
RECOMB
Amir Ben-Dor, Doron Lipson, Anya Tsalenko, Mark Reimers, Lars O. Baumbusch, Michael T. Barrett, John N. Weinstein, Anne-Lise Børresen-Dale, Zohar Yakhini
2007 J jnl
Optimization of probe coverage for high-resolution oligonucleotide aCGH.
Bioinform.
Doron Lipson, Zohar Yakhini, Yonatan Aumann
2007 J jnl
Semi-supervised class discovery using quantitative phenotypes - CVD as a case study.
BMC Bioinform.
Israel Steinfeld, Roy Navon, Diego Ardigò, Ivana Zavaroni, Zohar Yakhini
2007 J jnl
Similarities and differences of gene expression in yeast stress conditions.
Bioinform.
Oleg Rokhlenko, Ydo Wexler, Zohar Yakhini
2006 J jnl
A High-Throughput Approach for Associating MicroRNAs with Their Activity Conditions.
J. Comput. Biol.
Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini
2006 J jnl
Analysis of Snp-expression Association Matrices.
J. Bioinform. Comput. Biol.
Anya Tsalenko, Roded Sharan, Vessela N. Kristensen, Hege Edvardsen, Anne-Lise Børresen-Dale, Amir Ben-Dor, Zohar Yakhini
2006 J jnl
Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis.
J. Comput. Biol.
Doron Lipson, Yonatan Aumann, Amir Ben-Dor, Nathan Linial, Zohar Yakhini
2005 B conf
A High-Throughput Approach for Associating microRNAs with Their Activity Conditions.
RECOMB
Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini
2005 — conf
Analysis of SNP-Expression Association Matrices.
CSB
Anya Tsalenko, Roded Sharan, Hege Edvardsen, Vessela N. Kristensen, Anne-Lise Børresen-Dale, Amir Ben-Dor, Zohar Yakhini
2005 J jnl
Designing optimally multiplexed SNP genotyping assays.
J. Comput. Syst. Sci.
Yonatan Aumann, Efrat Manisterski, Zohar Yakhini
2005 A* conf
Dotted interval graphs and high throughput genotyping.
SODA
Yonatan Aumann, Moshe Lewenstein, Oren Melamud, Ron Y. Pinter, Zohar Yakhini
2005 B conf
Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis.
RECOMB
Doron Lipson, Yonatan Aumann, Amir Ben-Dor, Nathan Linial, Zohar Yakhini
2005 J jnl
Exploratory visualization of array-based comparative genomic hybridization.
Inf. Vis.
Robert Kincaid, Amir Ben-Dor, Zohar Yakhini
2005 J jnl
Finding Approximate Tandem Repeats in Genomic Sequences.
J. Comput. Biol.
Ydo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Geiger
2005 J jnl
Multiplexing Schemes for Generic SNP Genotyping Assays.
J. Comput. Biol.
Roded Sharan, Jens Gramm, Zohar Yakhini, Amir Ben-Dor
2004 B conf
Finding approximate tandem repeats in genomic sequences.
RECOMB
Ydo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Geiger
2004 C conf
Joint Analysis of DNA Copy Numbers and Gene Expression Levels.
WABI
Doron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini
2004 Misc conf
Multiplexing Schemes for Generic SNP Genotyping Assays.
Pacific Symposium on Biocomputing
Roded Sharan, Amir Ben-Dor, Zohar Yakhini
2004 J jnl
Towards Optimally Multiplexed Applications of Universal Arrays.
J. Comput. Biol.
Amir Ben-Dor, Tzvika Hartman, Richard M. Karp, Benno Schwikowski, Roded Sharan, Zohar Yakhini
2004 — conf
Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs.
Regulatory Genomics
Chaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini
2003 A conf
A Distance-Based Branch and Bound Feature Selection Algorithm.
UAI
Ari Frank, Dan Geiger, Zohar Yakhini
2003 C conf
Designing Optimally Multiplexed SNP Genotyping Assays.
WABI
Yonatan Aumann, Efrat Manisterski, Zohar Yakhini
2003 J jnl
Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem.
J. Comput. Biol.
Amir Ben-Dor, Benny Chor, Richard M. Karp, Zohar Yakhini
2003 Misc conf
Methods for Analysis and Visualization of SNP Genotype Data for Complex Diseases.
Pacific Symposium on Biocomputing
Anya Tsalenko, Amir Ben-Dor, Nancy Cox, Zohar Yakhini
2003 B conf
Towards optimally multiplexed applications of universal DNA tag systems.
RECOMB
Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini
2002 C conf
Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome.
WABI
Doron Lipson, Peter Webb, Zohar Yakhini
2002 B conf
Discovering local structure in gene expression data: the order-preserving submatrix problem.
RECOMB
Amir Ben-Dor, Benny Chor, Richard M. Karp, Zohar Yakhini
2001 B conf
Class discovery in gene expression data.
RECOMB
Amir Ben-Dor, Nir Friedman, Zohar Yakhini
2000 J jnl
Tissue Classification with Gene Expression Profiles.
J. Comput. Biol.
Amir Ben-Dor, Laurakay Bruhn, Nir Friedman, Iftach Nachman, Michèl Schummer, Zohar Yakhini
2000 B conf
Tissue classification with gene expression profiles.
RECOMB
Amir Ben-Dor, Laurakay Bruhn, Nir Friedman, Iftach Nachman, Michèl Schummer, Zohar Yakhini
2000 J jnl
Universal DNA Tag Systems: A Combinatorial Design Scheme.
J. Comput. Biol.
Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini
2000 B conf
Universal DNA tag systems: a combinatorial design scheme.
RECOMB
Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini
1999 J jnl
Clustering Gene Expression Patterns.
J. Comput. Biol.
Amir Ben-Dor, Ron Shamir, Zohar Yakhini
1999 B conf
Clustering gene expression patterns.
RECOMB
Amir Ben-Dor, Zohar Yakhini
1996 A conf
On the Sample Complexity of Learning Bayesian Networks.
UAI
Nir Friedman, Zohar Yakhini