Zlatko Trajanoski

31 papers Journal 29Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction.
Bioinform.
Dietmar Rieder, Georgios Fotakis, Markus Ausserhofer, Rene Geyeregger, Wolfgang Paster, Zlatko Trajanoski, Francesca Finotello
2020 J jnl
NeoFuse: predicting fusion neoantigens from RNA sequencing data.
Bioinform.
Georgios Fotakis, Dietmar Rieder, Marlene Haider, Zlatko Trajanoski, Francesca Finotello
2020 J jnl
Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data.
Bioinform.
Gregor Sturm, Tamás Szabó, Georgios Fotakis, Marlene Haider, Dietmar Rieder, Zlatko Trajanoski, Francesca Finotello
2017 J jnl
TIminer: NGS data mining pipeline for cancer immunology and immunotherapy.
Bioinform.
Elias Tappeiner, Francesca Finotello, Pornpimol Charoentong, Clemens Mayer, Dietmar Rieder, Zlatko Trajanoski
2016 J jnl
meRanTK: methylated RNA analysis ToolKit.
Bioinform.
Dietmar Rieder, Thomas Amort, Elisabeth Kugler, Alexandra Lusser, Zlatko Trajanoski
2014 J jnl
A survey of tools for variant analysis of next-generation genome sequencing data.
Briefings Bioinform.
Stephan Pabinger, Andreas Dander, Maria Fischer, René Snajder, Michael Sperk, Mirjana Efremova, Birgit Krabichler, Michael R. Speicher, Johannes Zschocke, Zlatko Trajanoski
2014 J jnl
MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data.
Database J. Biol. Databases Curation
Stephan Pabinger, René Snajder, Timo Hardiman, Michaela Willi, Andreas Dander, Zlatko Trajanoski
2014 J jnl
Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages.
BMC Bioinform.
Andreas Dander, Matthias Baldauf, Michael Sperk, Stephan Pabinger, Benjamin Hiltpolt, Zlatko Trajanoski
2014 J jnl
SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases.
BMC Bioinform.
Dominik Schweiger, Zlatko Trajanoski, Stephan Pabinger
2013 J jnl
GPViz: dynamic visualization of genomic regions and variants affecting protein domains.
Bioinform.
René Snajder, Zlatko Trajanoski, Hubert Hackl
2013 J jnl
Mathematical models for translational and clinical oncology.
J. Clin. Bioinform.
Ralf Gallasch, Mirjana Efremova, Pornpimol Charoentong, Hubert Hackl, Zlatko Trajanoski
2011 J jnl
MEMOSys: Bioinformatics platform for genome-scale metabolic models.
BMC Syst. Biol.
Stephan Pabinger, Robert Rader, Rasmus Agren, Jens Nielsen, Zlatko Trajanoski
2009 J jnl
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks.
Bioinform.
Gabriela Bindea, Bernhard Mlecnik, Hubert Hackl, Pornpimol Charoentong, Marie Tosolini, Amos Kirilovsky, Wolf-Herman Fridman, Franck Pagès, Zlatko Trajanoski, Jérôme Galon
2009 J jnl
QPCR: Application for real-time PCR data management and analysis.
BMC Bioinform.
Stephan Pabinger, Gerhard G. Thallinger, René Snajder, Heiko Eichhorn, Robert Rader, Zlatko Trajanoski
2009 J jnl
iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis.
BMC Bioinform.
Gernot Stocker, Maria Fischer, Dietmar Rieder, Gabriela Bindea, Simon Kainz, Michael Oberstolz, James G. McNally, Zlatko Trajanoski
2007 J jnl
MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.
BMC Bioinform.
Jürgen Hartler, Gerhard G. Thallinger, Gernot Stocker, Alexander Sturn, Thomas R. Burkard, Erik Körner, Robert Rader, Andreas Schmidt, Karl Mechtler, Zlatko Trajanoski
2007 J jnl
TAMEE: data management and analysis for tissue microarrays.
BMC Bioinform.
Gerhard G. Thallinger, Kerstin Baumgartner, Martin Pirklbauer, Martina Uray, Elke Pauritsch, Gabor Mehes, Charles R. Buck, Kurt Zatloukal, Zlatko Trajanoski
2006 J jnl
CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis.
Nucleic Acids Res.
Johannes Rainer, Fátima Sánchez-Cabo, Gernot Stocker, Alexander Sturn, Zlatko Trajanoski
2005 — conf
A fully Bayesian model to cluster gene-expression profiles.
ECCB/JBI
C. Vogl, Fátima Sánchez-Cabo, Gernot Stocker, Simon J. Hubbard, Olaf Wolkenhauer, Zlatko Trajanoski
2005 J jnl
A quantization method based on threshold optimization for microarray short time series.
BMC Bioinform.
Barbara Di Camillo, Fátima Sánchez-Cabo, Gianna Toffolo, Sreekumaran K. Nair, Zlatko Trajanoski, Claudio Cobelli
2005 J jnl
MARS: Microarray analysis, retrieval, and storage system.
BMC Bioinform.
Michael Maurer, Robert Molidor, Alexander Sturn, Jürgen Hartler, Hubert Hackl, Gernot Stocker, Andreas Prokesch, Marcel Scheideler, Zlatko Trajanoski
2005 J jnl
Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data.
Bioinform.
J. S. Yu, Stefano Ongarello, R. Fiedler, X. W. Chen, Gianna Toffolo, Claudio Cobelli, Zlatko Trajanoski
2005 J jnl
PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways.
Nucleic Acids Res.
Bernhard Mlecnik, Marcel Scheideler, Hubert Hackl, Jürgen Hartler, Fátima Sánchez-Cabo, Zlatko Trajanoski
2004 J jnl
ArrayNorm: comprehensive normalization and analysis of microarray data.
Bioinform.
Roland Pieler, Fátima Sánchez-Cabo, Hubert Hackl, Gerhard G. Thallinger, Zlatko Trajanoski
2004 J jnl
ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster.
Bioinform.
Gernot Stocker, Dietmar Rieder, Zlatko Trajanoski
2003 J jnl
Client-Server environment for high-performance gene expression data analysis.
Bioinform.
Alexander Sturn, Bernhard Mlecnik, Roland Pieler, Johannes Rainer, Thomas Truskaller, Zlatko Trajanoski
2003 J jnl
Java editor for biological pathways.
Bioinform.
Elmar Trost, Hubert Hackl, Michael Maurer, Zlatko Trajanoski
2002 J jnl
Genesis: cluster analysis of microarray data.
Bioinform.
Alexander Sturn, John Quackenbush, Zlatko Trajanoski
2002 J jnl
YPL.db: the Yeast Protein Localization database.
Nucleic Acids Res.
Georg Habeler, Klaus Natter, Gerhard G. Thallinger, Matthew E. Crawford, Sepp D. Kohlwein, Zlatko Trajanoski
1998 J jnl
Neural predictive controller for insulin delivery using the subcutaneous route.
IEEE Trans. Biomed. Eng.
Zlatko Trajanoski, Paul Wach
1993 — conf
Subcutaneous insulin absorption model for parameter estimation from time-course of plasma insulin.
System Modelling and Optimization
Zlatko Trajanoski, Paul Wach, Peter Kotanko, Falko Skrabal