Ziyi Li

18 papers Journal 18
YearRankTypeTitle / Venue / Authors
2026 J jnl
TUSCAN: Tumor segmentation and classification analysis in spatial transcriptomics.
PLoS Comput. Biol.
Chenxuan Zang, Charles C. Guo, Yaohong Wang, Peng Wei, Ziyi Li
2025 J jnl
PoweREST: Statistical power estimation for spatial transcriptomics experiments to detect differentially expressed genes between two conditions.
PLoS Comput. Biol.
Lan Shui, Anirban Maitra, Ying Yuan, Ken Lau, Harsimran Kaur, Liang Li, Ziyi Li
2024 J jnl
Regional analysis to delineate intrasample heterogeneity with RegionalST.
Bioinform.
Yue Lyu, Chong Wu, Wei Sun, Ziyi Li
2024 J jnl
SCIntRuler: guiding the integration of multiple single-cell RNA-seq datasets with a novel statistical metric.
Bioinform.
Yue Lyu, Steven H. Lin, Hao Wu, Ziyi Li
2023 J jnl
A comprehensive assessment of cell type-specific differential expression methods in bulk data.
Briefings Bioinform.
Guanqun Meng, Wen Tang, Emina Huang, Ziyi Li, Hao Feng
2023 J jnl
A novel statistical method for decontaminating T-cell receptor sequencing data.
Briefings Bioinform.
Ruoxing Li, Mehmet Altan, Alexandre Reuben, Ruitao Lin, John V. Heymach, Hai Tran, Runzhe Chen, Latasha Little, Shawna Hubert, Jianjun Zhang, Ziyi Li
2022 J jnl
A comprehensive comparison of supervised and unsupervised methods for cell type identification in single-cell RNA-seq.
Briefings Bioinform.
Xiaobo Sun, Xiaochu Lin, Ziyi Li, Hao Wu
2022 J jnl
A machine learning-based method for automatically identifying novel cells in annotating single-cell RNA-seq data.
Bioinform.
Ziyi Li, Yizhuo Wang, Irene Ganan-Gomez, Simona Colla, Kim-Anh Do
2022 J jnl
CondiS web app: imputation of censored lifetimes for machine learning-based survival analysis.
Bioinform.
Yizhuo Wang, Christopher R. Flowers, Ziyi Li, Xuelin Huang
2022 J jnl
CondiS: A conditional survival distribution-based method for censored data imputation overcoming the hurdle in machine learning-based survival analysis.
J. Biomed. Informatics
Yizhuo Wang, Christopher R. Flowers, Ziyi Li, Xuelin Huang
2022 J jnl
EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.
Bioinform.
Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu
2022 J jnl
NeuCA web server: a neural network-based cell annotation tool with web-app and GUI.
Bioinform.
Daoyu Duan, Sijia He, Emina Huang, Ziyi Li, Hao Feng
2021 J jnl
Complete deconvolution of DNA methylation signals from complex tissues: a geometric approach.
Bioinform.
Weiwei Zhang, Hao Wu, Ziyi Li
2020 J jnl
Detection of differentially methylated CpG sites between tumor samples with uneven tumor purities.
Bioinform.
Weiwei Zhang, Ziyi Li, Nana Wei, Hua-Jun Wu, Xiaoqi Zheng
2020 J jnl
Robust partial reference-free cell composition estimation from tissue expression.
Bioinform.
Ziyi Li, Zhenxing Guo, Ying Cheng, Peng Jin, Hao Wu
2019 J jnl
Dissecting differential signals in high-throughput data from complex tissues.
Bioinform.
Ziyi Li, Zhijin Wu, Peng Jin, Hao Wu
2019 J jnl
Distributed learning from multiple EHR databases: Contextual embedding models for medical events.
J. Biomed. Informatics
Ziyi Li, Kirk Roberts, Xiaoqian Jiang, Qi Long
2017 J jnl
Incorporating biological information in sparse principal component analysis with application to genomic data.
BMC Bioinform.
Ziyi Li, Sandra E. Safo, Qi Long