Ziwei Yang

28 papers A* 3A 1Journal 15Unranked 9
YearRankTypeTitle / Venue / Authors
2026 J jnl
DeepEvidence: Empowering Biomedical Discovery with Deep Knowledge Graph Research.
CoRR
Zifeng Wang, Zheng Chen, Ziwei Yang, Xuan Wang, Qiao Jin, Yifan Peng, Zhiyong Lu, Jimeng Sun
2026 A* conf
Targeted Pathway Inference for Biological Knowledge Bases via Graph Learning and Explanation.
AAAI
Rikuto Kotoge, Ziwei Yang, Zheng Chen, Yushun Dong, Yasuko Matsubara, Jimeng Sun, Yasushi Sakurai
2025 J jnl
DBgDel: Database-Enhanced Gene Deletion Framework for Growth-Coupled Production in Genome-Scale Metabolic Models.
IEEE Trans. Comput. Biol. Bioinform.
Ziwei Yang, Takeyuki Tamura
2025 J jnl
DeepGDel: Deep Learning-Based Gene Deletion Prediction Framework for Growth-Coupled Production in Genome-Scale Metabolic Models.
IEEE Trans. Comput. Biol. Bioinform.
Ziwei Yang, Takeyuki Tamura
2025 J jnl
ExPath: Towards Explaining Targeted Pathways for Biological Knowledge Bases.
CoRR
Rikuto Kotoge, Ziwei Yang, Zheng Chen, Yushun Dong, Yasuko Matsubara, Jimeng Sun, Yasushi Sakurai
2025 A* conf
GeSubNet: Gene Interaction Inference for Disease Subtype Network Generation.
ICLR
Ziwei Yang, Zheng Chen, Xin Liu, Rikuto Kotoge, Peng Chen, Yasuko Matsubara, Yasushi Sakurai, Jimeng Sun
2024 J jnl
CMOB: Large-Scale Cancer Multi-Omics Benchmark with Open Datasets, Tasks, and Baselines.
CoRR
Ziwei Yang, Rikuto Kotoge, Zheng Chen, Xihao Piao, Yasuko Matsubara, Yasushi Sakurai
2024 J jnl
Can Large Language Models Replace Data Scientists in Clinical Research?
CoRR
Zifeng Wang, Benjamin P. Danek, Ziwei Yang, Zheng Chen, Jimeng Sun
2024 J jnl
GeSubNet: Gene Interaction Inference for Disease Subtype Network Generation.
CoRR
Ziwei Yang, Zheng Chen, Xin Liu, Rikuto Kotoge, Peng Chen, Yasuko Matsubara, Yasushi Sakurai, Jimeng Sun
2023 J jnl
Learning vector quantized representation for cancer subtypes identification.
Comput. Methods Programs Biomed.
Zheng Chen, Ziwei Yang, Lingwei Zhu, Peng Gao, Takashi Matsubara, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2023 — conf
MFHCC: Multi-View Feature Hierarchical Contrastive Clustering Model for Multi-Omics Data.
BIBM
Zongli Jiang, Hongwei Ren, Ziwei Yang, Jinli Zhang, Zheng Chen
2023 A conf
MoCLIM: Towards Accurate Cancer Subtyping via Multi-Omics Contrastive Learning with Omics-Inference Modeling.
CIKM
Ziwei Yang, Zheng Chen, Yasuko Matsubara, Yasushi Sakurai
2023 J jnl
MoCLIM: Towards Accurate Cancer Subtyping via Multi-Omics Contrastive Learning with Omics-Inference Modeling.
CoRR
Ziwei Yang, Zheng Chen, Yasuko Matsubara, Yasushi Sakurai
2022 — conf
Adaptive Spike-Like Representation of EEG Signals for Sleep Stages Scoring.
EMBC
Lingwei Zhu, Ziwei Yang, Koki Odani, Guang Shi, Yirong Kan, Zheng Chen, Renyuan Zhang
2022 J jnl
Adaptive Spike-Like Representation of EEG Signals for Sleep Stages Scoring.
CoRR
Lingwei Zhu, Koki Odani, Ziwei Yang, Guang Shi, Yirong Kan, Zheng Chen, Renyuan Zhang
2022 — conf
Automated Cancer Subtyping via Vector Quantization Mutual Information Maximization.
ECML/PKDD (1)
Zheng Chen, Lingwei Zhu, Ziwei Yang, Takashi Matsubara
2022 J jnl
Automated Cancer Subtyping via Vector Quantization Mutual Information Maximization.
CoRR
Zheng Chen, Lingwei Zhu, Ziwei Yang, Takashi Matsubara
2022 — conf
Automatic Sleep Staging via Frequency-Wise Spiking Neural Networks.
BIBM
Haohui Jia, Ziwei Yang, Pei Gao, Man Wu, Chen Li, Yirong Kan, Renyuan Zhang
2022 J jnl
Cancer Subtyping by Improved Transcriptomic Features Using Vector Quantized Variational Autoencoder.
CoRR
Zheng Chen, Ziwei Yang, Lingwei Zhu, Guang Shi, Kun Yue, Takashi Matsubara, Shigehiko Kanaya, Md. Altaf-Ul-Amin
2022 — conf
Cancer Subtyping via Embedded Unsupervised Learning on Transcriptomics Data.
EMBC
Ziwei Yang, Lingwei Zhu, Zheng Chen, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2022 J jnl
Cancer Subtyping via Embedded Unsupervised Learning on Transcriptomics Data.
CoRR
Ziwei Yang, Lingwei Zhu, Zheng Chen, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2022 J jnl
Enhancement on Model Interpretability and Sleep Stage Scoring Performance with A Novel Pipeline Based on Deep Neural Network.
CoRR
Zheng Chen, Ziwei Yang, Ming Huang, Toshiyo Tamura, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2022 — conf
Exploring the Feasibility of Transformer Based Models on Question Relatedness.
HPCC/DSS/SmartCity/DependSys
Honglin Shu, Pei Gao, Ziwei Yang, Chen Li, Man Wu
2022 — conf
Hierarchical Categorical Generative Modeling for Multi-omics Cancer Subtyping.
BIBM
Ziwei Yang, Lingwei Zhu, Chen Li, Zheng Chen, Naoki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2022 A* conf
Multi-Tier Platform for Cognizing Massive Electroencephalogram.
IJCAI
Zheng Chen, Lingwei Zhu, Ziwei Yang, Renyuan Zhang
2022 J jnl
Multi-Tier Platform for Cognizing Massive Electroencephalogram.
CoRR
Zheng Chen, Lingwei Zhu, Ziwei Yang, Renyuan Zhang
2021 — conf
An End-to-End Sleep Staging Simulator Based on Mixed Deep Neural Networks.
BIBM
Zheng Chen, Ziwei Yang, Dong Wang, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya
2021 — conf
Exploring Feasibility of Truth-Involved Automatic Sleep Staging Combined with Transformer.
BIBM
Ziwei Yang, Dong Wang, Zheng Chen, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya