Ziv Bar-Joseph

110 papers A* 2A 4B 12C 1Misc 1Journal 77Unranked 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
Deep Batch Active Learning for Protein Structure Modeling.
J. Comput. Biol.
Zexin Xue, Michael Bailey, Abhinav Gupta, Ruijiang Li, Alejandro Corrochano-Navarro, Sizhen Li, Lorenzo Kogler-Anele, Qui Yu, Heidi Rommelaere, Wander Van Breedam, Norbert Furtmann, Joseph Batchelor, Ziv Bar-Joseph, Sven Jager
2025 B conf
Active Learning for Protein Structure Prediction.
RECOMB
Zexin Xue, Michael Bailey, Abhinav Gupta, Ruijiang Li, Alejandro Corrochano-Navarro, Sizhen Li, Lorenzo Kogler-Anele, Qui Yu, Ziv Bar-Joseph, Sven Jager
2025 J jnl
ENACT: End-to-End Analysis of Visium High Definition (HD) Data.
Bioinform.
Mena Soliman Asaad Kamel, Yiwen Song, Ana Solbas, Sergio Villordo, Amrut Sarangi, Pavel Senin, Sunaal Mathew, Luis Cano Ayestas, Clément Levin, Seqian Wang, Marion Classe, Ziv Bar-Joseph, Albert Pla Planas
2025 J jnl
PyEvoCell: an LLM-augmented single-cell trajectory analysis dashboard.
Bioinform.
Sachin Mathur, Mathieu Beauvais, Arnau Giribet, Nicolas Aragon Barrero, Chaorui Zhang, Towsif Rahman, Seqian Wang, Jeremy Huang, Nima Nouri, Andre H. Kurlovs, Ziv Bar-Joseph, Peyman Passban
2025 J jnl
Recovering time-varying networks from single-cell data.
Bioinform.
Euxhen Hasanaj, Barnabás Póczos, Ziv Bar-Joseph
2024 J jnl
Constrained Pseudo-Time Ordering for Clinical Transcriptomics Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Sachin Mathur, Hamid Mattoo, Ziv Bar-Joseph
2024 J jnl
Identifying indications for novel drugs using electronic health records.
Comput. Biol. Medicine
Lukas Adamek, Greg Padiasek, Chaorui Zhang, Ingrid O'dwyer, Nicolas Capit, Flavio Dormont, Ramon Hernandez, Ziv Bar-Joseph, Brandon Rufino
2024 J jnl
Integrating patients in time series clinical transcriptomics data.
Bioinform.
Euxhen Hasanaj, Sachin Mathur, Ziv Bar-Joseph
2024 J jnl
Many-Shot In-Context Learning for Molecular Inverse Design.
CoRR
Saeed Moayedpour, Alejandro Corrochano-Navarro, Faryad Sahneh, Shahriar Noroozizadeh, Alexander Koetter, Jiri Vymetal, Lorenzo Kogler-Anele, Pablo Mas, Yasser Jangjou, Sizhen Li, Michael Bailey, Marc Bianciotto, Hans Matter, Christoph Grebner, Gerhard Hessler, Ziv Bar-Joseph, Sven Jager
2024 J jnl
Predicting lung aging using scRNA-Seq data.
PLoS Comput. Biol.
Qi Song, Alex Singh, John E. McDonough, Taylor Sterling Adams, Robin Vos, Ruben De Man, Greg Myers, Laurens J. Ceulemans, Bart M. Vanaudenaerde, Wim A. Wuyts, Xiting Yan, Jonas Schupp, James S. Hagood, Naftali Kaminski, Ziv Bar-Joseph
2024 J jnl
Proxy endpoints - bridging clinical trials and real world data.
J. Biomed. Informatics
Maxim Kryukov, Kathleen P. Moriarty, Macarena Villamea, Ingrid O'dwyer, Ohn Chow, Flavio Dormont, Ramon Hernandez, Ziv Bar-Joseph, Brandon Rufino
2024 J jnl
Recovering Time-Varying Networks From Single-Cell Data.
CoRR
Euxhen Hasanaj, Barnabás Póczos, Ziv Bar-Joseph
2024 J jnl
Representations of lipid nanoparticles using large language models for transfection efficiency prediction.
Bioinform.
Saeed Moayedpour, Jonathan Broadbent, Saleh Riahi, Michael Bailey, Hoa V. Thu, Dimitar A. Dobchev, Akshay Balsubramani, Ricardo N. D. Santos, Lorenzo Kogler-Anele, Alejandro Corrochano-Navarro, Sizhen Li, Fernando U. Montoya, Vikram Agarwal, Ziv Bar-Joseph, Sven Jager
2024 J jnl
SpatialOne: end-to-end analysis of visium data at scale.
Bioinform.
Mena Soliman Asaad Kamel, Amrut Sarangi, Pavel Senin, Sergio Villordo, Sunaal Mathew, Het Barot, Seqian Wang, Ana Solbas, Luis Cano Ayestas, Marion Classe, Ziv Bar-Joseph, Albert Pla Planas
2023 — conf
Deep-Learning Based Cell Segmentation and Deconvolution in Spatial Transcriptomics.
BCB
Mena Soliman Asaad Kamel, Amrut Sarangi, Cindy Qin, Het Barot, Pavel Senin, Sergio Villordo, Sunaal Mathew, Albert Pla Planas, Ziv Bar-Joseph
2023 J jnl
Deriving spatial features from
Bioinform.
Monica T. Dayao, Alexandro Trevino, Honesty Kim, Matthew Ruffalo, H. Blaize D'angio, Ryan Preska, Umamaheswar Duvvuri, Aaron T. Mayer, Ziv Bar-Joseph
2022 J jnl
CINS: Cell Interaction Network inference from Single cell expression data.
PLoS Comput. Biol.
Ye Yuan, Carlos Cosme, Taylor Sterling Adams, Jonas Schupp, Koji Sakamoto, Nikos Xylourgidis, Matthew Ruffalo, Jiachen Li, Naftali Kaminski, Ziv Bar-Joseph
2022 J jnl
Clustering spatial transcriptomics data.
Bioinform.
Haotian Teng, Ye Yuan, Ziv Bar-Joseph
2022 J jnl
Integrating longitudinal clinical and microbiome data to predict growth faltering in preterm infants.
J. Biomed. Informatics
Jose Lugo-Martinez, Siwei Xu, Justine Levesque, Daniel Gallagher, Leslie A. Parker, Josef Neu, Christopher J. Stewart, Janet E. Berrington, Nicholas D. Embleton, Gregory Young, Katherine E. Gregory, Misty Good, Arti Tandon, David Genetti, Tracy Warren, Ziv Bar-Joseph
2022 J jnl
UNIFAN: A Tool for Unsupervised Single-Cell Clustering and Annotation.
J. Comput. Biol.
Dongshunyi Li, Jun Ding, Ziv Bar-Joseph
2022 B conf
Unsupervised Cell Functional Annotation for Single-Cell RNA-Seq.
RECOMB
Dongshunyi Li, Jun Ding, Ziv Bar-Joseph
2021 J jnl
Deep learning of gene relationships from single cell time-course expression data.
Briefings Bioinform.
Ye Yuan, Ziv Bar-Joseph
2021 J jnl
Dhaka: variational autoencoder for unmasking tumor heterogeneity from single cell genomic data.
Bioinform.
Sabrina Rashid, Sohrab Shah, Ziv Bar-Joseph, Ravi Pandya
2021 J jnl
Identifying signaling genes in spatial single-cell expression data.
Bioinform.
Dongshunyi Li, Jun Ding, Ziv Bar-Joseph
2021 J jnl
Supervised Adversarial Alignment of Single-Cell RNA-seq Data.
J. Comput. Biol.
Songwei Ge, Haohan Wang, Amir Alavi, Eric P. Xing, Ziv Bar-Joseph
2021 B conf
The Epigenetic Consensus Problem.
SIROCCO
Sabrina Rashid, Gadi Taubenfeld, Ziv Bar-Joseph
2020 J jnl
Causal inference using deep neural networks.
CoRR
Ye Yuan, Xueying Ding, Ziv Bar-Joseph
2020 J jnl
Genome-Wide Epigenetic Modifications as a Shared Memory Consensus Problem.
CoRR
Sabrina Rashid, Gadi Taubenfeld, Ziv Bar-Joseph
2020 J jnl
Inferring TF activation order in time series scRNA-Seq studies.
PLoS Comput. Biol.
Chieh Lin, Jun Ding, Ziv Bar-Joseph
2020 J jnl
Iterative point set registration for aligning scRNA-seq data.
PLoS Comput. Biol.
Amir Alavi, Ziv Bar-Joseph
2020 B conf
Supervised Adversarial Alignment of Single-Cell RNA-seq Data.
RECOMB
Songwei Ge, Haohan Wang, Amir Alavi, Eric P. Xing, Ziv Bar-Joseph
2019 J jnl
A bacterial based distributed gradient descent model for mass scale evacuations.
Swarm Evol. Comput.
Sabrina Rashid, Shashank Singh, Saket Navlakha, Ziv Bar-Joseph
2019 J jnl
Continuous-state HMMs for modeling time-series single-cell RNA-Seq data.
Bioinform.
Chieh Lin, Ziv Bar-Joseph
2019 J jnl
Deep learning for inferring gene relationships from single-cell expression data.
Proc. Natl. Acad. Sci. USA
Ye Yuan, Ziv Bar-Joseph
2019 — conf
Integration of Heterogeneous Experimental Data Improves Global Map of Human Protein Complexes.
BCB
Jose Lugo-Martinez, Jörn Dengjel, Ziv Bar-Joseph, Robert F. Murphy
2019 J jnl
Network-guided prediction of aromatase inhibitor response in breast cancer.
PLoS Comput. Biol.
Matthew Ruffalo, Roby Thomas, Jian Chen, Adrian V. Lee, Steffi Oesterreich, Ziv Bar-Joseph
2019 J jnl
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.
Nat.
Michael P. Snyder, Shin Lin, Amanda Posgai, Mark Atkinson, Aviv Regev, Jennifer Rood, Orit Rozenblatt-Rosen, Leslie Gaffney, Anna Hupalowska, Rahul Satija, Nils Gehlenborg, Jay Shendure, Julia Laskin, Pehr Harbury, Nicholas A. Nystrom, Jonathan C. Silverstein, Ziv Bar-Joseph, Kun Zhang, Katy Börner, Yiing Lin, Richard Conroy, Dena Procaccini, Ananda L. Roy, Ajay Pillai, Marishka Brown, Zorina S. Galis, Long Cai, Cole Trapnell, Dana Jackson, Garry P. Nolan, William James Greenleaf, Sylvia K. Plevritis, Sara Ahadi, Stephanie A. Nevins, Hayan Lee, Christian Martijn Schuerch, Sarah Black, Vishal Gautham Venkataraaman, Ed Esplin, Aaron Horning, Amir Bahmani, Xin Sun, Sanjay Jain, James S. Hagood, Gloria Pryhuber, Peter V. Kharchenko, Bernd Bodenmiller, Todd Brusko, Michael Clare-Salzler, Harry Nick, Kevin Otto, Clive Wasserfall, Marda Jorgensen, Maigan Brusko, Sergio Maffioletti, Richard M. Caprioli, Jeffrey M. Spraggins, Danielle Gutierrez, Nathan Heath Patterson, Elizabeth K. Neumann, Raymond Harris, Mark P. de Caestecker, Agnes B. Fogo, Raf Van de Plas, Ken Lau, Guo-Cheng Yuan, Qian Zhu, Ruben Dries, Peng Yin, Sinem K. Saka, Jocelyn Y. Kishi, Yu Wang, Isabel Goldaracena, Dong Hye Ye, Kristin E. Burnum-Johnson, Paul D. Piehowski, Charles Ansong, Ying Zhu, Tushar Desai, Jay Mulye, Peter Chou, Monica Nagendran, Sarah A. Teichmann, Benedict Paten, Robert F. Murphy, Jian Ma, Vladimir Yu. Kiselev, Carl Kingsford, Allyson Ricarte, Maria Keays, Sushma Anand Akoju, Matthew Ruffalo, Margaret Vella, Chuck McCallum, Leonard E. Cross, Samuel H. Friedman, Randy W. Heiland, Bruce William Herr II, Paul Macklin, Ellen M. Quardokus, Lisel Record, James P. Sluka, Griffin M. Weber, Philip D. Blood, Alexander Ropelewski, William Shirey, Robin M. Scibek, Paula M. Mabee, W. Christopher Lenhardt, Kimberly Robasky, Stavros Michailidis, John C. Marioni, Andrew Butler, Tim Stuart, Eyal Fisher, Shila Ghazanfar, Gökcen Eraslan, Tommaso Biancalani, Eeshit D. Vaishnav, Pothur Srinivas, Aaron Pawlyk, Salvatore Sechi, Elizabeth L. Wilder, James Anderson
2018 J jnl
Predicting protein targets for drug-like compounds using transcriptomics.
PLoS Comput. Biol.
Nicolas A. Pabon, Yan Xia, Samuel K. Estabrooks, Zhaofeng Ye, Amanda K. Herbrand, Evelyn Süß, Ricardo M. Biondi, Victoria A. Assimon, Jason E. Gestwicki, Jeffrey L. Brodsky, Carlos J. Camacho, Ziv Bar-Joseph
2018 J jnl
iDREM: Interactive visualization of dynamic regulatory networks.
PLoS Comput. Biol.
Jun Ding, James S. Hagood, Namasivayam Ambalavanan, Naftali Kaminski, Ziv Bar-Joseph
2017 J jnl
MethRaFo: MeDIP-seq methylation estimate using a Random Forest Regressor.
Bioinform.
Jun Ding, Ziv Bar-Joseph
2017 — ch.
Probabilistic Models for Error Correction of Nonuniform Sequencing Data.
Algorithms for Next-Generation Sequencing Data
Marcel H. Schulz, Ziv Bar-Joseph
2017 J jnl
Reconstructing cancer drug response networks using multitask learning.
BMC Syst. Biol.
Matthew Ruffalo, Petar Stojanov, Venkata Krishna Pillutla, Rohan Varma, Ziv Bar-Joseph
2017 J jnl
TASIC: determining branching models from time series single cell data.
Bioinform.
Sabrina Rashid, Darrell N. Kotton, Ziv Bar-Joseph
2016 B conf
Distributed Gradient Descent in Bacterial Food Search.
RECOMB
Shashank Singh, Sabrina Rashid, Saket Navlakha, Ziv Bar-Joseph
2016 J jnl
Genome wide predictions of miRNA regulation by transcription factors.
Bioinform.
Matthew Ruffalo, Ziv Bar-Joseph
2016 J jnl
Reconstructing the temporal progression of HIV-1 immune response pathways.
Bioinform.
Siddhartha Jain, Joel Arrais, Narasimhan J. Venkatachari, Velpandi Ayyavoo, Ziv Bar-Joseph
2016 B conf
Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments.
RECOMB
Emre Sefer, Ziv Bar-Joseph
2015 J jnl
Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks.
PLoS Comput. Biol.
Saket Navlakha, Alison L. Barth, Ziv Bar-Joseph
2015 J jnl
Distributed information processing in biological and computational systems.
Commun. ACM
Saket Navlakha, Ziv Bar-Joseph
2015 J jnl
MassExodus: modeling evolving networks in harsh environments.
Data Min. Knowl. Discov.
Saket Navlakha, Christos Faloutsos, Ziv Bar-Joseph
2015 J jnl
SMARTS: reconstructing disease response networks from multiple individuals using time series gene expression data.
Bioinform.
Aaron Wise, Ziv Bar-Joseph
2015 J jnl
cDREM: Inferring Dynamic Combinatorial Gene Regulation.
J. Comput. Biol.
Aaron Wise, Ziv Bar-Joseph
2014 J jnl
Multitask Learning of Signaling and Regulatory Networks with Application to Studying Human Response to Flu.
PLoS Comput. Biol.
Siddhartha Jain, Anthony Gitter, Ziv Bar-Joseph
2013 J jnl
A high-throughput framework to detect synapses in electron microscopy images.
Bioinform.
Saket Navlakha, Joseph Suhan, Alison L. Barth, Ziv Bar-Joseph
2013 J jnl
Beeping a maximal independent set.
Distributed Comput.
Yehuda Afek, Noga Alon, Ziv Bar-Joseph, Alejandro Cornejo, Bernhard Haeupler, Fabian Kuhn
2013 J jnl
Carbon catabolite repression correlates with the maintenance of near invariant molecular crowding in proliferating E. coli cells.
BMC Syst. Biol.
Yi Zhou, Alexei Vázquez, Aaron Wise, Tomoko Warita, Katsuhiko Warita, Ziv Bar-Joseph, Zoltán N. Oltvai
2013 J jnl
Identifying proteins controlling key disease signaling pathways.
Bioinform.
Anthony Gitter, Ziv Bar-Joseph
2013 J jnl
Integrating sequence, expression and interaction data to determine condition-specific miRNA regulation.
Bioinform.
Hai-Son Le, Ziv Bar-Joseph
2012 J jnl
A Network-based Approach for Predicting Missing Pathway Interactions.
PLoS Comput. Biol.
Saket Navlakha, Anthony Gitter, Ziv Bar-Joseph
2012 J jnl
Beeping a Maximal Independent Set
CoRR
Yehuda Afek, Noga Alon, Ziv Bar-Joseph, Alejandro Cornejo, Bernhard Haeupler, Fabian Kuhn
2012 J jnl
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data.
BMC Syst. Biol.
Marcel H. Schulz, William E. Devanny, Anthony Gitter, Shan Zhong, Jason Ernst, Ziv Bar-Joseph
2012 J jnl
Matching experiments across species using expression values and textual information.
Bioinform.
Aaron Wise, Zoltán N. Oltvai, Ziv Bar-Joseph
2011 A conf
Beeping a Maximal Independent Set.
DISC
Yehuda Afek, Noga Alon, Ziv Bar-Joseph, Alejandro Cornejo, Bernhard Haeupler, Fabian Kuhn
2011 J jnl
Biological interaction networks are conserved at the module level.
BMC Syst. Biol.
Guy E. Zinman, Shan Zhong, Ziv Bar-Joseph
2011 J jnl
DECOD: fast and accurate discriminative DNA motif finding.
Bioinform.
Peter Huggins, Shan Zhong, Idit Shiff, Rachel Beckerman, Oleg Laptenko, Carol Prives, Marcel H. Schulz, Itamar Simon, Ziv Bar-Joseph
2011 J jnl
Discriminative Motif Finding for Predicting Protein Subcellular Localization.
IEEE ACM Trans. Comput. Biol. Bioinform.
Tien-ho Lin, Robert F. Murphy, Ziv Bar-Joseph
2011 — conf
Inferring Interaction Networks using the IBP applied to microRNA Target Prediction.
NIPS
Hai-Son Le, Ziv Bar-Joseph
2011 B conf
Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs.
RECOMB
Tien-ho Lin, Ziv Bar-Joseph, Robert F. Murphy
2011 J jnl
Learning Cellular Sorting Pathways Using Protein Interactions and Sequence Motifs.
J. Comput. Biol.
Tien-ho Lin, Ziv Bar-Joseph, Robert F. Murphy
2011 J jnl
MIS on the fly
CoRR
Yehuda Afek, Noga Alon, Ziv Bar-Joseph
2011 J jnl
Preface.
J. Comput. Biol.
Manolis Kellis, Andrea Califano, Ziv Bar-Joseph
2010 J jnl
Cross Species Expression Analysis of Innate Immune Response.
J. Comput. Biol.
Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Joseph
2010 — conf
Cross Species Expression Analysis using a Dirichlet Process Mixture Model with Latent Matchings.
NIPS
Hai-Son Le, Ziv Bar-Joseph
2010 J jnl
Cross-species queries of large gene expression databases.
Bioinform.
Hai-Son Le, Zoltán N. Oltvai, Ziv Bar-Joseph
2009 J jnl
A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors.
J. Comput. Biol.
Yanxin Shi, Michael Klutstein, Itamar Simon, Tom M. Mitchell, Ziv Bar-Joseph
2009 B conf
Cross Species Expression Analysis of Innate Immune Response.
RECOMB
Yong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Joseph
2009 J jnl
Cross species analysis of microarray expression data.
Bioinform.
Yong Lu, Peter Huggins, Ziv Bar-Joseph
2009 J jnl
Modeling spatial and temporal variation in motion data.
ACM Trans. Graph.
Manfred Lau, Ziv Bar-Joseph, James Kuffner
2008 B conf
A Combined Expression-Interaction Model for Inferring the Temporal Activity of Transcription Factors.
RECOMB
Yanxin Shi, Itamar Simon, Tom M. Mitchell, Ziv Bar-Joseph
2008 J jnl
A Semi-Supervised Method for Predicting Transcription Factor-Gene Interactions in
PLoS Comput. Biol.
Jason Ernst, Qasim K. Beg, Krin A. Kay, Gábor Balázsi, Zoltán N. Oltvai, Ziv Bar-Joseph
2008 A conf
Alignment and classification of time series gene expression in clinical studies.
ISMB
Tien-ho Lin, Naftali Kaminski, Ziv Bar-Joseph
2008 J jnl
Extracting Dynamics from Static Cancer Expression Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Anupam Gupta, Ziv Bar-Joseph
2008 J jnl
Impact of the solvent capacity constraint on E. coli metabolism.
BMC Syst. Biol.
Alexei Vázquez, Qasim K. Beg, Marcio A. de Menezes, Jason Ernst, Ziv Bar-Joseph, Albert-László Barabási, László G. Boros, Zoltán N. Oltvai
2008 A conf
Protein complex identification by supervised graph local clustering.
ISMB
Yanjun Qi, Fernanda Balem, Christos Faloutsos, Judith Klein-Seetharaman, Ziv Bar-Joseph
2007 J jnl
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies.
J. Comput. Biol.
Naftali Kaminski, Ziv Bar-Joseph
2007 J jnl
A mixture of feature experts approach for protein-protein interaction prediction.
BMC Bioinform.
Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph
2007 — conf
Continuous hidden process model for time series expression experiments.
ISMB/ECCB (Supplement of Bioinformatics)
Yanxin Shi, Michael Klutstein, Itamar Simon, Tom M. Mitchell, Ziv Bar-Joseph
2007 J jnl
Inferring pairwise regulatory relationships from multiple time series datasets.
Bioinform.
Yanxin Shi, Tom M. Mitchell, Ziv Bar-Joseph
2006 B conf
A Patient-Gene Model for Temporal Expression Profiles in Clinical Studies.
RECOMB
Naftali Kaminski, Ziv Bar-Joseph
2006 — conf
Identifying cycling genes by combining sequence homology and expression data.
ISMB (Supplement of Bioinformatics)
Yong Lu, Ronald Rosenfeld, Ziv Bar-Joseph
2006 J jnl
STEM: a tool for the analysis of short time series gene expression data.
BMC Bioinform.
Jason Ernst, Ziv Bar-Joseph
2005 A* conf
Active learning for sampling in time-series experiments with application to gene expression analysis.
ICML
Rohit Singh, Nathan P. Palmer, David K. Gifford, Bonnie Berger, Ziv Bar-Joseph
2005 — conf
Clustering short time series gene expression data.
ISMB (Supplement of Bioinformatics)
Jason Ernst, Gerard J. Nau, Ziv Bar-Joseph
2005 Misc conf
Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources.
Pacific Symposium on Biocomputing
Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph
2004 J jnl
Analyzing time series gene expression data.
Bioinform.
Ziv Bar-Joseph
2004 — conf
Deconvolving cell cycle expression data with complementary information.
ISMB/ECCB (Supplement of Bioinformatics)
Ziv Bar-Joseph, Shlomit Farkash, David K. Gifford, Itamar Simon, Roni Rosenfeld
2003 J jnl
Continuous Representations of Time-Series Gene Expression Data.
J. Comput. Biol.
Ziv Bar-Joseph, Georg K. Gerber, David K. Gifford, Tommi S. Jaakkola, Itamar Simon
2003 J jnl
Hierarchical Context-based Pixel Ordering.
Comput. Graph. Forum
Ziv Bar-Joseph, Daniel Cohen-Or
2003 — —
Inferring interactions, expression programs and regulatory networks from high throughput biological data.
Ziv Bar-Joseph
2003 J jnl
K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data.
Bioinform.
Ziv Bar-Joseph, Erik D. Demaine, David K. Gifford, Nathan Srebro, Angèle M. Hamel, Tommi S. Jaakkola
2003 — conf
Sound-by-numbers: motion-driven sound synthesis.
Symposium on Computer Animation
Marc Cardle, Stephen Brooks, Ziv Bar-Joseph, Peter Robinson
2002 B conf
A new approach to analyzing gene expression time series data.
RECOMB
Ziv Bar-Joseph, Georg K. Gerber, David K. Gifford, Tommi S. Jaakkola, Itamar Simon
2002 A conf
Early-Delivery Dynamic Atomic Broadcast.
DISC
Ziv Bar-Joseph, Idit Keidar, Nancy A. Lynch
2002 C conf
K-ary Clustering with Optimal Leaf Ordering for Gene Expression Data.
WABI
Ziv Bar-Joseph, Erik D. Demaine, David K. Gifford, Angèle M. Hamel, Tommi S. Jaakkola, Nathan Srebro
2002 J jnl
Synthesizing Sound Textures through Wavelet Tree Learning.
IEEE Computer Graphics and Applications
Shlomo Dubnov, Ziv Bar-Joseph, Ran El-Yaniv, Dani Lischinski, Michael Werman
2001 — conf
Fast optimal leaf ordering for hierarchical clustering.
ISMB (Supplement of Bioinformatics)
Ziv Bar-Joseph, David K. Gifford, Tommi S. Jaakkola
2001 J jnl
Texture Mixing and Texture Movie Synthesis Using Statistical Learning.
IEEE Trans. Vis. Comput. Graph.
Ziv Bar-Joseph, Ran El-Yaniv, Dani Lischinski, Michael Werman
2000 B conf
Totally Ordered Multicast with Bounded Delays and Variable Rates.
OPODIS
Ziv Bar-Joseph, Idit Keidar, Tal Anker, Nancy A. Lynch
1999 — conf
Granular Synthesis of Sound Textures Using Statistical Learning.
ICMC
Ziv Bar-Joseph, Dani Lischinski, Michael Werman, Shlomo Dubnov, Ran El-Yaniv
1998 A* conf
A Tight Lower Bound for Randomized Synchronous Consensus.
PODC
Ziv Bar-Joseph, Michael Ben-Or