Ziding Zhang

20 papers Journal 19Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
Graph neural network integrated with pretrained protein language model for predicting human-virus protein-protein interactions.
Briefings Bioinform.
Linyang Jiang, Xiaodi Yang, Xiaokun Guo, Dianke Li, Jiajun Li, Stefan Wuchty, Wenyu Shi, Ziding Zhang
2025 J jnl
OMetaNet: an efficient hybrid deep learning model based on multimodal data fusion and contrastive learning for predicting 2'-O-methylation sites in human RNA.
BMC Bioinform.
Peng Shen, Yiyu Lin, Sen Yang, Ziding Zhang
2024 J jnl
Multi-modal features-based human-herpesvirus protein-protein interaction prediction by using LightGBM.
Briefings Bioinform.
Xiaodi Yang, Stefan Wuchty, Zeyin Liang, Li Ji, Bingjie Wang, Jialin Zhu, Ziding Zhang, Yujun Dong
2023 J jnl
SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network.
Briefings Bioinform.
Yan Huang, Stefan Wuchty, Yuan Zhou, Ziding Zhang
2021 J jnl
Current status and future perspectives of computational studies on human-virus protein-protein interactions.
Briefings Bioinform.
Xianyi Lian, Xiaodi Yang, Shiping Yang, Ziding Zhang
2021 J jnl
HVIDB: a comprehensive database for human-virus protein-protein interactions.
Briefings Bioinform.
Xiaodi Yang, Xianyi Lian, Chen Fu, Stefan Wuchty, Shiping Yang, Ziding Zhang
2021 — conf
Multi-scale Convolutional Neural Networks for the Prediction of Human-virus Protein Interactions.
ICAART (2)
Xiaodi Yang, Ziding Zhang, Stefan Wuchty
2021 J jnl
Transfer learning via multi-scale convolutional neural layers for human-virus protein-protein interaction prediction.
Bioinform.
Xiaodi Yang, Shiping Yang, Xianyi Lian, Stefan Wuchty, Ziding Zhang
2020 J jnl
Prediction and analysis of human-herpes simplex virus type 1 protein-protein interactions by integrating multiple methods.
Quant. Biol.
Xianyi Lian, Xiaodi Yang, Jiqi Shao, Fujun Hou, Shiping Yang, Dongli Pan, Ziding Zhang
2019 J jnl
Critical assessment and performance improvement of plant-pathogen protein-protein interaction prediction methods.
Briefings Bioinform.
Shiping Yang, Hong Li, Huaqin He, Yuan Zhou, Ziding Zhang
2019 J jnl
Prediction of protein-protein interactions between fungus (Magnaporthe grisea) and rice (Oryza sativa L.).
Briefings Bioinform.
Shiwei Ma, Qi Song, Huan Tao, Andrew P. Harrison, Shaobo Wang, Wei Liu, Shoukai Lin, Ziding Zhang, Yufang Ai, Huaqin He
2018 J jnl
PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System.
Genom. Proteom. Bioinform.
Huan Qi, Zhenhong Jiang, Kang Zhang, Shiping Yang, Fei He, Ziding Zhang
2015 J jnl
BEAN 2.0: an integrated web resource for the identification and functional analysis of type III secreted effectors.
Database J. Biol. Databases Curation
Xiaobao Dong, Xiaotian Lu, Ziding Zhang
2015 J jnl
MAPanalyzer: a novel online tool for analyzing microtubule-associated proteins.
Database J. Biol. Databases Curation
Yuan Zhou, Shiping Yang, Tonglin Mao, Ziding Zhang
2015 J jnl
Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features.
Briefings Bioinform.
Zhen Chen, Yuan Zhou, Ziding Zhang, Jiangning Song
2011 J jnl
Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments.
Comput. Biol. Chem.
Chuan Wang, Ren-Xiang Yan, Xiao-Feng Wang, Jing-Na Si, Ziding Zhang
2011 J jnl
Outer membrane proteins can be simply identified using secondary structure element alignment.
BMC Bioinform.
Ren-Xiang Yan, Zhen Chen, Ziding Zhang
2009 J jnl
DescFold: A web server for protein fold recognition.
BMC Bioinform.
Ren-Xiang Yan, Jing-Na Si, Chuan Wang, Ziding Zhang
2008 J jnl
Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of
BMC Bioinform.
Yong-Zi Chen, Yu-Rong Tang, Zhi-Ya Sheng, Ziding Zhang
2006 J jnl
Comparison of a homology model and the crystallographic structure of human 11β-hydroxysteroid dehydrogenase type 1 (11βHSD1) in a structure-based identification of inhibitors.
J. Comput. Aided Mol. Des.
Laurence Miguet, Ziding Zhang, Maryse Barbier, Martin G. Grigorov