Zhong Wang

18 papers B 1Journal 13Unranked 3
YearRankTypeTitle / Venue / Authors
2025 J jnl
DNABERT-S: pioneering species differentiation with species-aware DNA embeddings.
Bioinform.
Zhihan Zhou, Weimin Wu, Harrison Ho, Jiayi Wang, Lizhen Shi, Ramana V. Davuluri, Zhong Wang, Han Liu
2025 J jnl
Genome-Factory: An Integrated Library for Tuning, Deploying, and Interpreting Genomic Models.
CoRR
Weimin Wu, Xuefeng Song, Yibo Wen, Qinjie Lin, Zhihan Zhou, Jerry Yao-Chieh Hu, Zhong Wang, Han Liu
2024 J jnl
DNABERT-S: Learning Species-Aware DNA Embedding with Genome Foundation Models.
CoRR
Zhihan Zhou, Weimin Wu, Harrison Ho, Jiayi Wang, Lizhen Shi, Ramana V. Davuluri, Zhong Wang, Han Liu
2022 — book
Introduction to Computational Metagenomics
Introduction to Computational Metagenomics
Zhong Wang
2022 J jnl
Persistent memory as an effective alternative to random access memory in metagenome assembly.
BMC Bioinform.
Jingchao Sun, Zhining Qiu, Rob Egan, Harrison Ho, Yue Li, Zhong Wang
2022 J jnl
Spot-on: A Checkpointing Framework for Fault-Tolerant Long-running Workloads on Cloud Spot Instances.
CoRR
Ashley Tung, Haiyan Wang, Yue Li, Zhong Wang, Jingchao Sun
2019 J jnl
De novo Nanopore read quality improvement using deep learning.
BMC Bioinform.
Nathan LaPierre, Rob Egan, Wei Wang, Zhong Wang
2019 J jnl
SpaRC: scalable sequence clustering using Apache Spark.
Bioinform.
Lizhen Shi, Xiandong Meng, Elizabeth Tseng, Michael Mascagni, Zhong Wang
2018 J jnl
Combining Hadoop with MPI to Solve Metagenomics Problems that are both Data- and Compute-intensive.
Int. J. Parallel Program.
Han Lin, Zhichao Su, Xiandong Meng, Xu Jin, Zhong Wang, Wenting Han, Hong An, Mengxian Chi, Zheng Wu
2017 J jnl
A case study of tuning MapReduce for efficient Bioinformatics in the cloud.
Parallel Comput.
Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng
2016 — conf
A Scalable Pipeline for Transcriptome Profiling Tasks with On-Demand Computing Clouds.
IPDPS Workshops
Shayan Shams, Nayong Kim, Xiandong Meng, Ming Tai Ha, Shantenu Jha, Zhong Wang, Joohyun Kim
2016 J jnl
Reconstructing single genomes from complex microbial communities.
it Inf. Technol.
Dongwan D. Kang, Edward M. Rubin, Zhong Wang
2015 — conf
Performance evaluation and tuning of BioPig for genomic analysis.
DISCS@SC
Lizhen Shi, Zhong Wang, Weikuan Yu, Xiandong Meng
2013 J jnl
ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.
Bioinform.
Scott C. Clark, Rob Egan, Peter I. Frazier, Zhong Wang
2013 B conf
Automatic Outlier Detection for Genome Assembly Quality Assessment.
e-Science
Taghrid Samak, Rob Egan, Brian Bushnell, Daniel K. Gunter, Alex Copeland, Zhong Wang
2013 J jnl
BioPig: a Hadoop-based analytic toolkit for large-scale sequence data.
Bioinform.
Henrik Nordberg, Karan Bhatia, Kai Wang, Zhong Wang
2012 — conf
Prediction of protein solubility in E. coli.
eScience
Taghrid Samak, Dan Gunter, Zhong Wang
2006 J jnl
Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation.
PLoS Comput. Biol.
Zhong Wang, Huntington F. Willard, Sayan Mukherjee, Terrence S. Furey