Zhihua Du

49 papers B 1Journal 38Unranked 9
YearRankTypeTitle / Venue / Authors
2026 J jnl
STAHD: a scalable and accurate method to detect spatial domains in high-resolution spatial transcriptomics data.
Bioinform.
Zhihua Du, Di Wang, Qiyi Chen, Yuehua Ou, Xinlei Huang, Xiang Zhou, Xubin Zheng
2025 — conf
BioLinkGPT: Predicting Missing TF-Target Gene Interactions Using Graph Neural Networks with Large Language Model.
BIBM
Zhihua Du, Weiliang Huang, Yanran Liu, Qiyi Chen, Rui Luo, Xubin Zheng
2025 J jnl
DAGFormer: A graph-based domain adaptation approach for single-cell cancer drug response prediction.
PLoS Comput. Biol.
Fen Yan, Zhihua Du, Yu-An Huang
2025 J jnl
MPDA: a data augmentation approach to improve deep learning for software vulnerability detection.
Empir. Softw. Eng.
Feiqiao Mao, Yingxiang Yuan, Xingyang Du, Li Gao, Zhihua Du
2025 J jnl
Multi-view attention graph convolutional networks for the host prediction of phages.
Knowl. Based Syst.
Lijia Ma, Peng Gao, Wenxiang Zhou, Qiuzhen Lin, Yuan Bai, Min Fang, Zhihua Du, Jianqiang Li
2025 J jnl
NASNet-DTI: accurate drug-target interaction prediction using heterogeneous graphs and node adaptation.
Briefings Bioinform.
Ningyu Zhong, Zhihua Du
2025 J jnl
ProtPhage: a deep learning framework for phage viral protein identification and functional annotation.
Briefings Bioinform.
Yuehua Ou, Qiyi Chen, Ningyu Zhong, Zhihua Du
2025 J jnl
scExGraph: Explainable graph neural network for predicting tumor environment components with single-cell sequencing data.
Knowl. Based Syst.
Zhihua Du, Jiale Yi, Jian-Qiang Li, Hai-Ru You, Zhu-Hong You, Zhi-An Huang, Yu-An Huang
2024 J jnl
AneuGuide™ software-assisted vs. manual measurements in sizing for pipeline embolization device: An agreement study.
Comput. Biol. Medicine
Bin Lv, Mingguang Sun, Yejie Shan, Xiangyu Cao, Zhihua Du, Xinfeng Liu, Rongju Zhang, Xiaochang Leng, Jens Fiehler, Adnan H. Siddiqui, Jianping Xiang, Jun Wang
2024 — conf
Enhancing Gene Cluster Identification and Classification in Bacterial Genomes Through Synonym Replacement and Deep Learning.
BIBM
Zhihua Du, Ningyu Zhong, Jianqiang Li
2024 J jnl
Hybrid Bayesian Optimization-Based Graphical Discovery for Methylation Sites Prediction.
IEEE J. Biomed. Health Informatics
Ling-Yan Gu, Ting-Bo Chen, Jianqiang Li, Yu-An Huang, Zhihua Du, Victor C. M. Leung, Jie Chen
2023 — conf
A Deep Transfer Fusion Model for Recognition of Acute Lymphoblastic Leukemia with Few Samples.
ICIC (2)
Zhihua Du, Xin Xia, Min Fang, Li Yu, Jianqiang Li
2023 — conf
GeneSpider: Inferring Gene Regulation Relationships Through Graph Neural Network from Single-Cell RNA Sequence Data.
ICIC (3)
Zhihua Du, Xing Zhong, Min Fang, Jianqiang Li
2023 J jnl
Improving Information Freshness via Backbone-Assisted Cooperative Access Points.
IEEE Internet Things J.
Haoyuan Pan, Yu Zhou, Tse-Tin Chan, Ming Tang, Jianqiang Li, Zhihua Du
2023 J jnl
Knowledge graph embedding for profiling the interaction between transcription factors and their target genes.
PLoS Comput. Biol.
Yang-Han Wu, Yu-An Huang, Jian-Qiang Li, Zhu-Hong You, Peng-Wei Hu, Lun Hu, Victor C. M. Leung, Zhihua Du
2023 J jnl
MInet: A Novel Network Model for Point Cloud Processing by Integrating Multi-Modal Information.
Sensors
Yuhao Wang, Yong Zuo, Zhihua Du, Xiaohan Song, Tian Luo, Xiaobin Hong, Jian Wu
2023 J jnl
Predicting TF Proteins by Incorporating Evolution Information Through PSSM.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhihua Du, Tianyou Huang, Vladimir N. Uversky, Jianqiang Li
2023 J jnl
Prokaryotic virus host prediction with graph contrastive augmentaion.
PLoS Comput. Biol.
Zhihua Du, Jun-Peng Zhong, Yun Liu, Jianqiang Li
2023 — conf
TFBSnet: A deep learning-based tool for predicting transcription factor binding site from DNA sequences.
BIBM
Zhihua Du, Tianyou Huang, Jian-Qiang Li, Vladimir N. Uversky
2022 J jnl
DeepCLD: An Efficient Sequence-Based Predictor of Intrinsically Disordered Proteins.
IEEE ACM Trans. Comput. Biol. Bioinform.
Min Fang, Yufeng He, Zhihua Du, Vladimir N. Uversky
2022 J jnl
GraphTGI: an attention-based graph embedding model for predicting TF-target gene interactions.
Briefings Bioinform.
Zhihua Du, Yang-Han Wu, Yu-An Huang, Jie Chen, Gui-Qing Pan, Lun Hu, Zhu-Hong You, Jian-Qiang Li
2022 J jnl
Improving Information Freshness via Backbone-Assisted Cooperative Access Points.
CoRR
Haoyuan Pan, Yu Zhou, Tse-Tin Chan, Ming Tang, Jianqiang Li, Zhihua Du
2022 J jnl
Inference of gene regulatory networks based on the Light Gradient Boosting Machine.
Comput. Biol. Chem.
Zhihua Du, Xing Zhong, Fangzhong Wang, Vladimir N. Uversky
2022 J jnl
Information Freshness and Energy Harvesting Tradeoff in Network-Coded Broadcasting.
IEEE Wirel. Commun. Lett.
Quanjia Ren, Tse-Tin Chan, Haoyuan Pan, Kin-Hon Ho, Zhihua Du
2022 J jnl
MDCS with fully encoding the information of local shape description for 3D Rigid Data matching.
Image Vis. Comput.
Zhihua Du, Yong Zuo, Jifang Qiu, Xiang Li, Yan Li, Hongxiang Guo, Xiaobin Hong, Jian Wu
2020 J jnl
DeepAdd: Protein function prediction from k-mer embedding and additional features.
Comput. Biol. Chem.
Zhihua Du, Yufeng He, Jianqiang Li, Vladimir N. Uversky
2019 J jnl
Quantitative Analysis of Blood Flow in Cerebral Venous Sinus With Stenosis by Patient-Specific CFD Modeling.
IEEE Access
Xin Liu, Zhihua Du, Tao Han, Dhanjoo N. Ghista, Shi Lin, Vicky Wang, Jun Wang, Heye Zhang, Zhigeng Pan
2017 J jnl
A novel adaptive control strategy for decomposition-based multiobjective algorithm.
Comput. Oper. Res.
Qiuzhen Lin, Chaoyu Tang, Yueping Ma, Zhihua Du, Jianqiang Li, Jianyong Chen, Zhong Ming
2016 J jnl
A novel adaptive hybrid crossover operator for multiobjective evolutionary algorithm.
Inf. Sci.
Qingling Zhu, Qiuzhen Lin, Zhihua Du, Zhengping Liang, Wenjun Wang, Zexuan Zhu, Jianyong Chen, Peizhi Huang, Zhong Ming
2016 J jnl
A novel artificial bee colony algorithm with depth-first search framework and elite-guided search equation.
Inf. Sci.
Laizhong Cui, Genghui Li, Qiuzhen Lin, Zhihua Du, Weifeng Gao, Jianyong Chen, Nan Lu
2016 J jnl
A novel hybrid differential evolution algorithm with modified CoDE and JADE.
Appl. Soft Comput.
Genghui Li, Qiuzhen Lin, Laizhong Cui, Zhihua Du, Zhengping Liang, Jianyong Chen, Nan Lu, Zhong Ming
2016 J jnl
A novel multiple rule sets data classification algorithm based on ant colony algorithm.
Appl. Soft Comput.
Zhengping Liang, Jiangtao Sun, Qiuzhen Lin, Zhihua Du, Jianyong Chen, Zhong Ming
2016 J jnl
Adaptive composite operator selection and parameter control for multiobjective evolutionary algorithm.
Inf. Sci.
Qiuzhen Lin, Zhiwang Liu, Qiao Yan, Zhihua Du, Carlos A. Coello Coello, Zhengping Liang, Wenjun Wang, Jianyong Chen
2015 J jnl
A double-module immune algorithm for multi-objective optimization problems.
Appl. Soft Comput.
Zhengping Liang, Ruizhen Song, Qiuzhen Lin, Zhihua Du, Jianyong Chen, Zhong Ming, Jianping Yu
2015 J jnl
A novel multi-objective particle swarm optimization with multiple search strategies.
Eur. J. Oper. Res.
Qiuzhen Lin, Jianqiang Li, Zhihua Du, Jianyong Chen, Zhong Ming
2015 — conf
Efficiency-Aware Workload Optimizations of Heterogeneous Cloud Computing for Capacity Planning in Financial Industry.
CSCloud
Keke Gai, Zhihua Du, Meikang Qiu, Hui Zhao
2012 J jnl
Orthogonal trigonometric polynomials: Riemann-Hilbert analysis and relations with OPUC.
Asymptot. Anal.
Zhihua Du, Jinyuan Du
2010 J jnl
Coloring and the Lovász Local Lemma.
Appl. Math. Lett.
Xing Chen, Zhihua Du, Jixiang Meng
2008 — conf
A New Algorithm for Reconstruction of Phylogenetic Tree.
AIRS
Zhihua Du, Zhen Ji
2008 B conf
Gene clustering using an evolutionary algorithm.
IEEE Congress on Evolutionary Computation
Zhihua Du, Yiwei Wang, Zhen Ji
2008 J jnl
PK-means: A new algorithm for gene clustering.
Comput. Biol. Chem.
Zhihua Du, Yiwei Wang, Zhen Ji
2006 — conf
Parallel Computing for Optimal Genomic Sequence Alignment.
FSKD
Zhihua Du, Zhen Ji, Feng Lin
2006 J jnl
pNJTree: A parallel program for reconstruction of neighbor-joining tree and its application in ClustalW.
Parallel Comput.
Zhihua Du, Feng Lin
2005 J jnl
A novel parallelization approach for hierarchical clustering.
Parallel Comput.
Zhihua Du, Feng Lin
2005 — —
High performance computing for computational biology
Zhihua Du
2005 J jnl
Pattern-constrained multiple polypeptide sequence alignment.
Comput. Biol. Chem.
Zhihua Du, Feng Lin
2005 J jnl
Reconstruction of large phylogenetic trees: A parallel approach.
Comput. Biol. Chem.
Zhihua Du, Feng Lin, Usman W. Roshan
2004 J jnl
A hierarchical clustering algorithm for MIMD architecture.
Comput. Biol. Chem.
Zhihua Du, Feng Lin
2004 — conf
Improvement of the Needleman-Wunsch Algorithm.
Rough Sets and Current Trends in Computing
Zhihua Du, Feng Lin