Zhi-Ping Liu - RankMe

71 papers B 1Misc 1Journal 57Unranked 12

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	MTPrior: A Multi-Task Hierarchical Graph Embedding Framework for Prioritizing Hepatocellular Carcinoma-Associated Genes and Long Noncoding RNAs. IEEE J. Biomed. Health Informatics Fatemeh Keikha, Zhi-Ping Liu
2026	J	`jnl`	Prognostic biomarker discovery via a connected network-constrained Cox proportional hazards model. Briefings Bioinform. Lingyu Li, Wai-Ki Ching, Zhi-Ping Liu
2025	J	`jnl`	GCNPMDA: Human microbe-disease association prediction by hierarchical graph convolutional network with layer attention. Biomed. Signal Process. Control. Chuanyan Wu, Bentao Lin, Huanghe Zhang, Da Xu, Rui Gao, Rui Song, Zhi-Ping Liu, Yang De Marinis
2025	J	`jnl`	Inferring cell-type-specific gene regulatory network from cellular transcriptomics data with GeneLink+. Briefings Bioinform. Wei Zhang, Bowen Shao, Wenrui Li, Wenbo Guo, Jiaxin Lyu, Guangyi Chen, Chuanyuan Wang, Zhi-Ping Liu
2025	J	`jnl`	LogicSR: prior-guided symbolic regression for gene regulatory network inference from single-cell transcriptomics data. Briefings Bioinform. Dezhen Zhang, Zhi-Ping Liu, Rui Gao
2025	J	`jnl`	NetWalkRank: Cancer Driver Gene Prioritization in Multiplex Gene Regulatory Networks by a Random Walk Approach. IEEE Trans. Comput. Biol. Bioinform. Fateme Keikha, Lingyu Li, Wai-Ki Ching, Zhi-Ping Liu
2025	J	`jnl`	PGDTA: Predicting Drug-Target Affinity Using Three-Dimensional Structure of Protein Pocket and Graph Neural Network. IEEE Trans. Comput. Biol. Bioinform. Yunhai Li, Pengpai Li, Duanchen Sun, Zhi-Ping Liu
2025	J	`jnl`	Practical quantum federated learning and its experimental demonstration. CoRR Zhi-Ping Liu, Xiao-Yu Cao, Hao-Wen Liu, Xiao-Ran Sun, Yu Bao, Yu-Shuo Lu, Hua-Lei Yin, Zeng-Bing Chen
2025	J	`jnl`	Quantum-enhanced blockchain federated learning via quantum Byzantine agreement. Sci. China Inf. Sci. Hao-Wen Liu, Zhi-Ping Liu, Hua-Lei Yin, Zeng-Bing Chen
2025	J	`jnl`	TransMarker: Unveiling dynamic network biomarkers in cancer progression through cross-state graph alignment and optimal transport. PLoS Comput. Biol. Fatemeh Keikha, Chuanyuan Wang, Zhixia Yang, Zhi-Ping Liu
2025	J	`jnl`	getDNB: identifying dynamic network biomarkers from time-varying gene regulations utilizing graph embedding techniques. Briefings Bioinform. Tong Wang, Lingyu Li, Zhi-Ping Liu
2025	J	`jnl`	getDNB: identifying dynamic network biomarkers of hepatocellular carcinoma from time-varying gene regulations utilizing graph embedding techniques for anomaly detection. Bioinform. Tong Wang, Zhi-Ping Liu
2024	J	`jnl`	Discovering explainable biomarkers for breast cancer anti-PD1 response via network Shapley value analysis. Comput. Methods Programs Biomed. Chenxi Sun, Zhi-Ping Liu
2024	J	`jnl`	LogicGep: Boolean networks inference using symbolic regression from time-series transcriptomic profiling data. Briefings Bioinform. Dezhen Zhang, Shuhua Gao, Zhi-Ping Liu, Rui Gao
2024	J	`jnl`	Network Activity Evaluation Reveals Significant Gene Regulatory Architectures During SARS-CoV-2 Viral Infection From Dynamic scRNA-seq Data. IEEE J. Biomed. Health Informatics Chuan-Yuan Wang, Zhi-Ping Liu
2024	—	`conf`	Predicting Drug-Target Affinity Using Protein Pocket and Graph Convolution Network. ISBRA (1) Yunhai Li, Pengpai Li, Duanchen Sun, Zhi-Ping Liu
2024	J	`jnl`	TopMarker: Computational screening biomarkers of hepatocellular carcinoma from transcriptome and interactome based on differential network topological parameters. Comput. Biol. Chem. Yanqiu Wang, Tong Wang, Yi Cao, Xu Qiao, Xianhua Han, Zhi-Ping Liu
2023	J	`jnl`	ActivePPI: quantifying protein-protein interaction network activity with Markov random fields. Bioinform. Chuan-Yuan Wang, Shiyu Xu, Duanchen Sun, Zhi-Ping Liu
2023	J	`jnl`	Biomarker discovery from high-throughput data by connected network-constrained support vector machine. Expert Syst. Appl. Lingyu Li, Zhi-Ping Liu
2023	J	`jnl`	Editorial: Insights in integrative bioinformatics-2021. Frontiers Bioinform. Zhi-Ping Liu
2023	J	`jnl`	LogBTF: gene regulatory network inference using Boolean threshold network model from single-cell gene expression data. Bioinform. Lingyu Li, Liangjie Sun, Guangyi Chen, Chi-Wing Wong, Wai-Ki Ching, Zhi-Ping Liu
2023	—	`conf`	MOFNet: A Deep Learning Framework of Integrating Multi-omics Data for Breast Cancer Diagnosis. ICIC (3) Chunxiao Zhang, Pengpai Li, Duanchen Sun, Zhi-Ping Liu
2023	—	`conf`	Multi-objective Optimization-Based Approach for Detection of Breast Cancer Biomarkers. ICIC (3) Jiaxin Yang, Chuan-Yuan Wang, Duanchen Sun, Zhi-Ping Liu
2023	J	`jnl`	Quantum Neural Network for Quantum Neural Computing. CoRR Min-Gang Zhou, Zhi-Ping Liu, Hua-Lei Yin, Chen-Long Li, Tong-Kai Xu, Zeng-Bing Chen
2022	—	`conf`	A Comparison Study of Predicting lncRNA-Protein Interactions via Representative Network Embedding Methods. ICIC (2) Guoqing Zhao, Pengpai Li, Zhi-Ping Liu
2022	J	`jnl`	A connected network-regularized logistic regression model for feature selection. Appl. Intell. Lingyu Li, Zhi-Ping Liu
2022	J	`jnl`	Automated machine learning for secure key rate in discrete-modulated continuous-variable quantum key distribution. CoRR Zhi-Ping Liu, Min-Gang Zhou, Wen-Bo Liu, Chen-Long Li, Jie Gu, Hua-Lei Yin, Zeng-Bing Chen
2022	J	`jnl`	Discovering biomarkers of hepatocellular carcinoma from single-cell RNA sequencing data by cooperative games on gene regulatory network. J. Comput. Sci. Zishuang Zhang, Chenxi Sun, Zhi-Ping Liu
2022	J	`jnl`	Evaluating Gene Regulatory Network Activity From Dynamic Expression Data by Regularized Constraint Programming. IEEE J. Biomed. Health Informatics Chuan-Yuan Wang, Shiyu Xu, Zhi-Ping Liu
2022	J	`jnl`	Graph attention network for link prediction of gene regulations from single-cell RNA-sequencing data. Bioinform. Guangyi Chen, Zhi-Ping Liu
2022	J	`jnl`	Identifying biomarkers for breast cancer by gene regulatory network rewiring. BMC Bioinform. Yijuan Wang, Zhi-Ping Liu
2022	J	`jnl`	PST-PRNA: prediction of RNA-binding sites using protein surface topography and deep learning. Bioinform. Pengpai Li, Zhi-Ping Liu
2022	J	`jnl`	Predicting Box-Office Markets with Machine Learning Methods. Entropy Dawei Li, Zhi-Ping Liu
2022	J	`jnl`	Predicting multiple types of MicroRNA-disease associations based on tensor factorization and label propagation. Comput. Biol. Medicine Na Yu, Zhi-Ping Liu, Rui Gao
2022	J	`jnl`	Robust biomarker screening from gene expression data by stable machine learning-recursive feature elimination methods. Comput. Biol. Chem. Lingyu Li, Wai-Ki Ching, Zhi-Ping Liu
2021	—	`conf`	A Semi-Supervised Learning Algorithm for Predicting MiRNA-Disease Association. BIBM Na Yu, Zhi-Ping Liu, Rui Gao
2021	—	`conf`	Inference of Gene Regulatory Network from Time Series Expression Data by Combining Local Geometric Similarity and Multivariate Regression. ICIC (3) Guangyi Chen, Zhi-Ping Liu
2021	J	`jnl`	Prediction of cardiovascular diseases by integrating multi-modal features with machine learning methods. Biomed. Signal Process. Control. Pengpai Li, Yongmei Hu, Zhi-Ping Liu
2021	J	`jnl`	Prioritizing Type 2 Diabetes Genes by Weighted PageRank on Bilayer Heterogeneous Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Haixia Shang, Zhi-Ping Liu
2020	J	`jnl`	Network-based prioritization of cancer genes by integrative ranks from multi-omics data. Comput. Biol. Medicine Haixia Shang, Zhi-Ping Liu
2020	—	`conf`	iNOA: An Improvement of Network Ontology Analysis with GO Semantic Similarity. ICBIP Yaohua Chang, Zhi-Ping Liu
2019	—	`conf`	Identifying Cancer Biomarkers from High-Throughput RNA Sequencing Data by Machine Learning. ICIC (2) Zishuang Zhang, Zhi-Ping Liu
2018	J	`jnl`	Detecting pathway biomarkers of diabetic progression with differential entropy. J. Biomed. Informatics Zhi-Ping Liu, Rui Gao
2018	J	`jnl`	Towards precise reconstruction of gene regulatory networks by data integration. Quant. Biol. Zhi-Ping Liu
2017	J	`jnl`	Multi-dimensional data representation using linear tensor coding. IET Image Process. Xu Qiao, Xiaoqing Liu, Yen-Wei Chen, Zhi-Ping Liu
2017	J	`jnl`	Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces. BMC Bioinform. Zhi-Ping Liu, Shutang Liu, Ruitang Chen, Xiaopeng Huang, Ling-Yun Wu
2016	J	`jnl`	CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data. BMC Bioinform. Guangyong Zheng, Yaochen Xu, Xiujun Zhang, Zhi-Ping Liu, Zhuo Wang, Luonan Chen, Xin-Guang Zhu
2016	J	`jnl`	Prediction of protein-RNA interactions using sequence and structure descriptors. Neurocomputing Zhi-Ping Liu, Hongyu Miao
2015	J	`jnl`	Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity. BMC Bioinform. Xindong Zhang, Lin Gao, Zhi-Ping Liu, Luonan Chen
2015	J	`jnl`	Identifying overlapping communities in social networks using multi-scale local information expansion. CoRR Hui-Jia Li, Junhua Zhang, Zhi-Ping Liu, Luonan Chen, Xiang-Sun Zhang
2015	J	`jnl`	RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. Database J. Biol. Databases Curation Zhi-Ping Liu, Canglin Wu, Hongyu Miao, Hulin Wu
2014	J	`jnl`	Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection. BMC Bioinform. Zhi-Ping Liu, Hulin Wu, Jian Zhu, Hongyu Miao
2013	J	`jnl`	NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference. Bioinform. Xiujun Zhang, Keqin Liu, Zhi-Ping Liu, Béatrice Duval, Jean-Michel Richer, Xing-Ming Zhao, Jin-Kao Hao, Luonan Chen
2013	J	`jnl`	Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer. J. Am. Medical Informatics Assoc. Zhenshu Wen, Zhi-Ping Liu, Zhengrong Liu, Yan Zhang, Luonan Chen
2012	—	`conf`	A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data. ISB Zhi-Ping Liu, Wanwei Zhang, Katsuhisa Horimoto, Luonan Chen
2012	J	`jnl`	A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats. BMC Syst. Biol. Guanying Piao, Shigeru Saito, Yidan Sun, Zhi-Ping Liu, Yong Wang, Xiao Han, Jiarui Wu, Huarong Zhou, Luonan Chen, Katsuhisa Horimoto
2012	—	`conf`	Construction and analysis of genome-wide SNP networks. ISB Yang Liu, Jin Zhou, Zhi-Ping Liu, Luonan Chen, Michael K. Ng
2012	J	`jnl`	Identifying disease genes and module biomarkers by differential interactions. J. Am. Medical Informatics Assoc. Xiaoping Liu, Zhi-Ping Liu, Xing-Ming Zhao, Luonan Chen
2012	J	`jnl`	Identifying dysregulated pathways in cancers from pathway interaction networks. BMC Bioinform. Keqin Liu, Zhi-Ping Liu, Jin-Kao Hao, Luonan Chen, Xing-Ming Zhao
2012	J	`jnl`	Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs. BMC Bioinform. Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen
2012	J	`jnl`	Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information. Bioinform. Xiujun Zhang, Xing-Ming Zhao, Kun He, Le Lu, Yongwei Cao, Jingdong Liu, Jin-Kao Hao, Zhi-Ping Liu, Luonan Chen
2012	J	`jnl`	Multiple-resource and multiple-depot emergency response problem considering secondary disasters. Expert Syst. Appl. Jianghua Zhang, Jin Li, Zhi-Ping Liu
2011	—	`conf`	Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis. ICIC (3) Zhi-Ping Liu, Jiguang Wang, Yu-Qing Qiu, Ross K. K. Leung, Xiang-Sun Zhang, Stephen Kwok-Wing Tsui, Luonan Chen
2011	J	`jnl`	Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression. BMC Syst. Biol. Huarong Zhou, Shigeru Saito, Guanying Piao, Zhi-Ping Liu, Jiguang Wang, Katsuhisa Horimoto, Luonan Chen
2010	J	`jnl`	Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains. BMC Syst. Biol. Zhi-Ping Liu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2010	Misc	`conf`	Inferring gene regulatory networks from expression data with prior knowledge by linear programming. ICMLC Zhi-Ping Liu, Xiang-Sun Zhang, Luonan Chen
2010	J	`jnl`	Prediction of protein-RNA binding sites by a random forest method with combined features. Bioinform. Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2009	B	`conf`	Dynamically dysfunctional protein interactions in the development of Alzheimer's disease. SMC Zhi-Ping Liu, Yong Wang, Tieqiao Wen, Xiang-Sun Zhang, Weiming Xia, Luonan Chen
2008	J	`jnl`	Protein cavity clustering based on community structure of pocket similarity network. Int. J. Bioinform. Res. Appl. Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zhang, Luonan Chen
2007	J	`jnl`	Predicting gene ontology functions from protein's regional surface structures. BMC Bioinform. Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Luonan Chen, Xiang-Sun Zhang
2006	—	`conf`	Short-Time Traffic Flow Forecasting Based on Projection Pursuit Auto-Regression. ICICIC (1) Xiao-Yuan Wang, Haihong Liu, Zhi-Ping Liu