Zhenyu Yue

39 papers Misc 1Journal 30Unranked 8
YearRankTypeTitle / Venue / Authors
2025 — conf
Controllable Edge-Type-Specific Interpretation in Multi-relational Graph Neural Networks for Drug Response Prediction.
ICIC (26)
Xiaodi Li, Jianfeng Gui, Leyao Kang, Ranran Zhang, Jie Chen, Zhenyu Yue
2025 J jnl
DRExplainer: Quantifiable interpretability in drug response prediction with directed graph convolutional network.
Artif. Intell. Medicine
Haoyuan Shi, Tao Xu, Xiaodi Li, Qian Gao, Zhiwei Xiong, Junfeng Xia, Zhenyu Yue
2025 J jnl
ExplainMIX: Explaining Drug Response Prediction in Directed Graph Neural Networks With Multi-Omics Fusion.
IEEE J. Biomed. Health Informatics
Ying Xiang, Xiaodi Li, Qian Gao, Junfeng Xia, Zhenyu Yue
2025 J jnl
Interpretable Dynamic Directed Graph Convolutional Network for Multi-Relational Prediction of Missense Mutation and Drug Response.
IEEE J. Biomed. Health Informatics
Qian Gao, Tao Xu, Xiaodi Li, Wanling Gao, Haoyuan Shi, Youhua Zhang, Jie Chen, Zhenyu Yue
2025 J jnl
MDAGCN: Predicting Mutation-Drug Associations Through Signed Graph Convolutional Networks via Graph Sampling.
IEEE Trans. Comput. Biol. Bioinform.
Xiaosong Wang, Xiaodi Li, Ying Xiang, Tao Xu, Zhenyu Yue, Lichuan Gu
2025 J jnl
MLGCN-Driver: a cancer driver gene identification method based on multi-layer graph convolutional neural network.
BMC Bioinform.
Pi-Jing Wei, Jingxin Zhou, Rui-Fen Cao, Yun Ding, Zhenyu Yue, Chun-Hou Zheng
2025 J jnl
RiceSNP-ABST: a deep learning approach to identify abiotic stress-associated single nucleotide polymorphisms in rice.
Briefings Bioinform.
Quan Lu, Jiajun Xu, Renyi Zhang, Hangcheng Liu, Meng Wang, Xiaoshuang Liu, Zhenyu Yue, Yujia Gao
2025 J jnl
deep-AMPpred: A Deep Learning Method for Identifying Antimicrobial Peptides and Their Functional Activities.
J. Chem. Inf. Model.
Jun Zhao, Hangcheng Liu, Leyao Kang, Wanling Gao, Quan Lu, Yuan Rao, Zhenyu Yue
2024 Misc conf
A Kidney Paired Donation Program Simulation.
WSC
Zhenyu Yue, Michael C. Fu, Hadi El-Amine, Jie Xu, Chun-Hung Chen
2024 J jnl
Comprehensive Assessment of BERT-Based Methods for Predicting Antimicrobial Peptides.
J. Chem. Inf. Model.
Wanling Gao, Jun Zhao, Jianfeng Gui, Zehan Wang, Jie Chen, Zhenyu Yue
2024 J jnl
Controllable Edge-Type-Specific Interpretation in Multi-Relational Graph Neural Networks for Drug Response Prediction.
CoRR
Xiaodi Li, Jianfeng Gui, Qian Gao, Haoyuan Shi, Zhenyu Yue
2024 J jnl
DRExplainer: Quantifiable Interpretability in Drug Response Prediction with Directed Graph Convolutional Network.
CoRR
Haoyuan Shi, Tao Xu, Xiaodi Li, Qian Gao, Junfeng Xia, Zhenyu Yue
2024 J jnl
Named entity recognition of rice genes and phenotypes based on BiGRU neural networks.
Comput. Biol. Chem.
Kangjie Wu, Liqian Xu, Xinxiang Li, Youhua Zhang, Zhenyu Yue, Yujia Gao, Yiqiong Chen
2024 J jnl
Reusability report: Uncovering associations in biomedical bipartite networks via a bilinear attention network with domain adaptation.
Nat. Mac. Intell.
Tao Xu, Haoyuan Shi, Wanling Gao, Xiaosong Wang, Zhenyu Yue
2024 J jnl
RiceSNP-BST: a deep learning framework for predicting biotic stress-associated SNPs in rice.
Briefings Bioinform.
Jiajun Xu, Yujia Gao, Quan Lu, Renyi Zhang, Jianfeng Gui, Xiaoshuang Liu, Zhenyu Yue
2024 J jnl
TeaTFactor: A Prediction Tool for Tea Plant Transcription Factors Based on BERT.
IEEE ACM Trans. Comput. Biol. Bioinform.
Qinan Tang, Ying Xiang, Wanling Gao, Liqiang Zhu, Zishu Xu, Yeyun Li, Zhenyu Yue
2023 J jnl
A convolutional network and attention mechanism-based approach to predict protein-RNA binding residues.
Comput. Biol. Chem.
Ke Li, Hongwei Wu, Zhenyu Yue, Yu Sun, Chuan Xia
2023 J jnl
Cross-Modality Features Fusion for Synthetic Aperture Radar Image Segmentation.
IEEE Trans. Geosci. Remote. Sens.
Fei Gao, Heqing Huang, Zhenyu Yue, Dongyu Li, Shuzhi Sam Ge, Tong Heng Lee, Huiyu Zhou
2023 J jnl
GRA-GCN: Dense Granule Protein Prediction in Apicomplexa Protozoa Through Graph Convolutional Network.
IEEE ACM Trans. Comput. Biol. Bioinform.
Haoyuan Shi, Haisong Feng, Zhenxiao Lu, Wei Xue, Congshan Yang, Zhenyu Yue
2023 J jnl
Prediction of hot spots in protein-DNA binding interfaces based on discrete wavelet transform and wavelet packet transform.
BMC Bioinform.
Yu Sun, Hongwei Wu, Zhengrong Xu, Zhenyu Yue, Ke Li
2023 J jnl
PredinID: Predicting Pathogenic Inframe Indels in Human Through Graph Convolution Neural Network With Graph Sampling Technique.
IEEE ACM Trans. Comput. Biol. Bioinform.
Zhenyu Yue, Ying Xiang, Guojun Chen, Xiaosong Wang, Ke Li, Youhua Zhang
2022 J jnl
Building a Natural Language Query and Control Interface for IoT Platforms.
IEEE Access
Zhipeng Xu, Hao Wu, Xu Chen, Yongmei Wang, Zhenyu Yue
2022 J jnl
DGPD: a knowledge database of dense granule proteins of the Apicomplexa.
Database J. Biol. Databases Curation
Hang Hu, Zhenxiao Lu, Haisong Feng, Guojun Chen, Yongmei Wang, Congshan Yang, Zhenyu Yue
2022 J jnl
MTAGCN: predicting miRNA-target associations in Camellia sinensis var. assamica through graph convolution neural network.
BMC Bioinform.
Haisong Feng, Ying Xiang, Xiaosong Wang, Wei Xue, Zhenyu Yue
2021 J jnl
A Novel Semi-Supervised Convolutional Neural Network Method for Synthetic Aperture Radar Image Recognition.
Cogn. Comput.
Zhenyu Yue, Fei Gao, Qingxu Xiong, Jun Wang, Teng Huang, Erfu Yang, Huiyu Zhou
2021 J jnl
A novel few-shot learning method for synthetic aperture radar image recognition.
Neurocomputing
Zhenyu Yue, Fei Gao, Qingxu Xiong, Jinping Sun, Amir Hussain, Huiyu Zhou
2021 J jnl
PredCID: prediction of driver frameshift indels in human cancer.
Briefings Bioinform.
Zhenyu Yue, Xinlu Chu, Junfeng Xia
2021 J jnl
dbMCS: A Database for Exploring the Mutation Markers of Anti-Cancer Drug Sensitivity.
IEEE J. Biomed. Health Informatics
Yueyue Shen, Youhua Zhang, Wei Xue, Zhenyu Yue
2020 J jnl
A Novel Attention Fully Convolutional Network Method for Synthetic Aperture Radar Image Segmentation.
IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens.
Zhenyu Yue, Fei Gao, Qingxu Xiong, Jun Wang, Amir Hussain, Huiyu Zhou
2020 — conf
Identification of Rice Drought-Resistant Gene Based on Gene Expression Profiles and Network Analysis Algorithm.
ICIC (2)
Yujia Gao, Yiqiong Chen, Zhiyu Ma, Tao Zeng, Iftikhar Ahmad, Youhua Zhang, Zhenyu Yue
2020 — conf
ProRice: An Ensemble Learning Approach for Predicting Promoters in Rice.
CSAE
Yanming Zuo, Hejie Zhou, Zhenyu Yue
2020 J jnl
dbCPM: a manually curated database for exploring the cancer passenger mutations.
Briefings Bioinform.
Zhenyu Yue, Le Zhao, Junfeng Xia
2019 — conf
Distinguishing Driver Missense Mutations from Benign Polymorphisms in Breast Cancer.
ICIC (2)
Xiyu Zhang, Ruoqing Xu, Yannan Bin, Zhenyu Yue
2019 J jnl
dbCID: a manually curated resource for exploring the driver indels in human cancer.
Briefings Bioinform.
Zhenyu Yue, Le Zhao, Na Cheng, Hua Yan, Junfeng Xia
2018 — conf
A Novel Semi-supervised Classification Method Based on Class Certainty of Samples.
BICS
Fei Gao, Zhenyu Yue, Qingxu Xiong, Jun Wang, Erfu Yang, Amir Hussain
2018 — conf
Computational Prediction of Driver Missense Mutations in Melanoma.
ICIC (2)
Haiyang Sun, Zhenyu Yue, Le Zhao, Junfeng Xia, Yannan Bin, Di Zhang
2017 J jnl
A Novel Active Semisupervised Convolutional Neural Network Algorithm for SAR Image Recognition.
Comput. Intell. Neurosci.
Fei Gao, Zhenyu Yue, Jun Wang, Jinping Sun, Erfu Yang, Huiyu Zhou
2015 — conf
Prediction of Clinical Drug Response Based on Differential Gene Expression Levels.
ICIC (2)
Zhenyu Yue, Yan Chen, Junfeng Xia
2012 — conf
CloudUDDI: An extended UDDI model for cloud services.
CCIS
Feng Ye, Zhijian Wang, Zhenyu Yue, Xinkun Xu, Yuansheng Lou