Zhenling Peng

24 papers Misc 1Journal 23
YearRankTypeTitle / Venue / Authors
2025 J jnl
Rapid and Accurate Protein Structure Database Search Using Inverse Folding Model and Contrastive Learning.
J. Chem. Inf. Model.
Qiuyi Lyu, Hong Wei, Shuaishuai Chen, Zhenling Peng, Jianyi Yang
2024 J jnl
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein-ligand Interactions.
Genom. Proteom. Bioinform.
Hong Wei, Wenkai Wang, Zhenling Peng, Jianyi Yang
2024 J jnl
RNA threading with secondary structure and sequence profile.
Bioinform.
Zongyang Du, Zhenling Peng, Jianyi Yang
2023 J jnl
A unified approach to protein domain parsing with inter-residue distance matrix.
Bioinform.
Kun Zhu, Hong Su, Zhenling Peng, Jianyi Yang
2023 J jnl
CAID prediction portal: a comprehensive service for predicting intrinsic disorder and binding regions in proteins.
Nucleic Acids Res.
Alessio Del Conte, Adel Bouhraoua, Mahta Mehdiabadi, Damiano Clementel, Alexander Miguel Monzon, Alex S. Holehouse, Daniel A. Griffith, Ryan J. Emenecker, Ashwini Patil, Ronesh Sharma, Tatsuhiko Tsunoda, Alok Sharma, Yi Jun Tang, Bin Liu, Claudio Mirabello, Björn Wallner, Burkhard Rost, Dagmar Ilzhöfer, Maria Littmann, Michael Heinzinger, Lea I M. Krautheimer, Michael Bernhofer, Liam J. McGuffin, Isabelle Callebaut, Tristan Bitard Feildel, Jian Liu, Jianlin Cheng, Zhiye Guo, Jinbo Xu, Sheng Wang, Nawar Malhis, Jörg Gsponer, Chol-Song Kim, Kun-Sop Han, Myong-Chol Ma, Lukasz A. Kurgan, Sina Ghadermarzi, Akila Katuwawala, Bi Zhao, Zhenling Peng, Zhonghua Wu, Gang Hu, Kui Wang, Md. Tamjidul Hoque, Md Wasi Ul Kabir, Michele Vendruscolo, Pietro Sormanni, Min Li, Fuhao Zhang, Pengzhen Jia, Yida Wang, Michail Yu. Lobanov, Oxana V. Galzitskaya, Wim F. Vranken, Adrián Díaz, Thomas Litfin, Yaoqi Zhou, Jack Hanson, Kuldip K. Paliwal, Zsuzsanna Dosztányi, Gábor Erdös, Silvio C. E. Tosatto, Damiano Piovesan
2023 J jnl
CLIP: accurate prediction of disordered linear interacting peptides from protein sequences using co-evolutionary information.
Briefings Bioinform.
Zhenling Peng, Zixia Li, Qiaozhen Meng, Bi Zhao, Lukasz A. Kurgan
2022 J jnl
On Monomeric and Multimeric Structures-Based Protein-Ligand Interactions.
IEEE ACM Trans. Comput. Biol. Bioinform.
Yajun Dai, Yang Li, Liping Wang, Zhenling Peng, Jianyi Yang
2022 J jnl
Single-sequence protein structure prediction using supervised transformer protein language models.
Nat. Comput. Sci.
Wenkai Wang, Zhenling Peng, Jianyi Yang
2022 J jnl
Toward the assessment of predicted inter-residue distance.
Bioinform.
Zongyang Du, Zhenling Peng, Jianyi Yang
2021 J jnl
Improved estimation of model quality using predicted inter-residue distance.
Bioinform.
Lisha Ye, Peikun Wu, Zhenling Peng, Jianzhao Gao, Jian Liu, Jianyi Yang
2021 J jnl
RNA inter-nucleotide 3D closeness prediction by deep residual neural networks.
Bioinform.
Saisai Sun, Wenkai Wang, Zhenling Peng, Jianyi Yang
2021 J jnl
Recognition of small molecule-RNA binding sites using RNA sequence and structure.
Bioinform.
Hong Su, Zhenling Peng, Jianyi Yang
2020 J jnl
CATHER: a novel threading algorithm with predicted contacts.
Bioinform.
Zongyang Du, Shuo Pan, Qi Wu, Zhenling Peng, Jianyi Yang
2020 J jnl
Protein contact prediction using metagenome sequence data and residual neural networks.
Bioinform.
Qi Wu, Zhenling Peng, Ivan Anishchenko, Qian Cong, David Baker, Jianyi Yang
2019 J jnl
Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles.
Bioinform.
Saisai Sun, Qi Wu, Zhenling Peng, Jianyi Yang
2019 J jnl
Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods.
Bioinform.
Hong Su, Mengchen Liu, Saisai Sun, Zhenling Peng, Jianyi Yang
2018 J jnl
A large-scale comparative assessment of methods for residue-residue contact prediction.
Briefings Bioinform.
Qiqige Wuyun, Wei Zheng, Zhenling Peng, Jianyi Yang
2018 J jnl
COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking.
Nucleic Acids Res.
Qi Wu, Zhenling Peng, Yang Zhang, Jianyi Yang
2018 J jnl
CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction.
Bioinform.
Qiaozhen Meng, Zhenling Peng, Jianyi Yang
2018 J jnl
Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method.
J. Chem. Inf. Model.
Zijuan Zhao, Zhenling Peng, Jianyi Yang
2018 J jnl
mTM-align: a server for fast protein structure database search and multiple protein structure alignment.
Nucleic Acids Res.
Runze Dong, Shuo Pan, Zhenling Peng, Yang Zhang, Jianyi Yang
2018 J jnl
mTM-align: an algorithm for fast and accurate multiple protein structure alignment.
Bioinform.
Runze Dong, Zhenling Peng, Yang Zhang, Jianyi Yang
2017 J jnl
An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier.
Bioinform.
Jiaqi Xia, Zhenling Peng, Dawei Qi, Hongbo Mu, Jianyi Yang
2012 Misc conf
On the Complementarity of the Consensus-Based Disorder Prediction.
Pacific Symposium on Biocomputing
Zhenling Peng, Lukasz A. Kurgan